RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 TBX21Q9UL17 535 aa19■□□□□ 0.63
SMC4-211ENST00000469858 R3HDM2Q9Y2K5 976 aaKnown RBP19■□□□□ 0.63
SMC4-211ENST00000469858 VWA8A3KMH1 1905 aa19■□□□□ 0.63
SMC4-211ENST00000469858 hCG_1818297A0A087WSY0 165 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 FAM187AA6NFU0 413 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 TADA2AO75478 443 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 CDKN2BP42772 138 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 PTGIRP43119 386 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 GJA8P48165 433 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 NDUFV1P49821 464 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 TKTL1P51854 596 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 EPHB4P54760 987 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 TSPY1Q01534 308 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 ADCY2Q08462 1091 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 HLTFQ14527 1009 aaKnown RBP eCLIP18.99■□□□□ 0.635e-35■■■■■ 127.1
SMC4-211ENST00000469858 EFHC1Q5JVL4 640 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 HDXQ7Z353 690 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 NPAS4Q8IUM7 802 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 ZMIZ2Q8NF64 920 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 RUNDC3BQ96NL0 473 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 RAB17Q9H0T7 212 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 DPH5Q9H2P9 285 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 TMEM39AQ9NV64 488 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 RASAL2Q9UJF2 1139 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 DAPK3O43293 454 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 HOXA2O43364 376 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 ATP8B1O43520 1251 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 PRPSAP2O60256 369 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 TJP3O95049 919 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 TFE3P19532 575 aaPredicted RBP18.99■□□□□ 0.63
SMC4-211ENST00000469858 BDNFP23560 247 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 CASP8Q14790 479 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 SCYL2Q6P3W7 929 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 FAM43BQ6ZT52 329 aaPredicted RBP18.99■□□□□ 0.63
SMC4-211ENST00000469858 LRRTM3Q86VH5 581 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 PKMYT1Q99640 499 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 FAM118BQ9BPY3 351 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 DCLK3Q9C098 648 aa18.99■□□□□ 0.63
SMC4-211ENST00000469858 C3orf70A6NLC5 250 aaPredicted RBP18.98■□□□□ 0.63
SMC4-211ENST00000469858 TBKBP1A7MCY6 615 aa18.98■□□□□ 0.63
SMC4-211ENST00000469858 BHMG1C9JSJ3 638 aaPredicted RBP18.98■□□□□ 0.63
SMC4-211ENST00000469858 NRP1O14786 923 aa18.98■□□□□ 0.63
SMC4-211ENST00000469858 TRAPPC3O43617 180 aa18.98■□□□□ 0.63
SMC4-211ENST00000469858 HSF2BPO75031 334 aa18.98■□□□□ 0.63
SMC4-211ENST00000469858 KDELR1P24390 212 aa18.98■□□□□ 0.63
SMC4-211ENST00000469858 PTPN7P35236 360 aa18.98■□□□□ 0.63
SMC4-211ENST00000469858 MRPS5P82675 430 aaKnown RBP18.98■□□□□ 0.63
SMC4-211ENST00000469858 CUL1Q13616 776 aa18.98■□□□□ 0.63
SMC4-211ENST00000469858 CYP4V2Q6ZWL3 525 aaPredicted RBP18.98■□□□□ 0.63
SMC4-211ENST00000469858 SND1Q7KZF4 910 aaKnown RBP eCLIP18.98■□□□□ 0.636e-9■■■■■ 32.8
SMC4-211ENST00000469858 ARCQ7LC44 396 aa18.98■□□□□ 0.63
SMC4-211ENST00000469858 GPRIN1Q7Z2K8 1008 aa18.98■□□□□ 0.63
SMC4-211ENST00000469858 CRIPAKQ8N1N5 446 aa18.98■□□□□ 0.63
SMC4-211ENST00000469858 KCTD6Q8NC69 237 aa18.98■□□□□ 0.63
SMC4-211ENST00000469858 PAWRQ96IZ0 340 aaKnown RBP18.98■□□□□ 0.63
SMC4-211ENST00000469858 CD48P09326 243 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 PTPN9P43378 593 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 MAPRE1Q15691 268 aaKnown RBP18.97■□□□□ 0.63
SMC4-211ENST00000469858 ERP44Q9BS26 406 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 ULBP1Q9BZM6 244 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.97■□□□□ 0.63
SMC4-211ENST00000469858 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.97■□□□□ 0.633e-18■■■■■ 78.4
SMC4-211ENST00000469858 ADAM28Q9UKQ2 775 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 ECEL1O95672 775 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 CLTBP09497 229 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 LBX1P52954 281 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 HDAC4P56524 1084 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 EMBQ6PCB8 327 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.97■□□□□ 0.634e-23■■■■■ 72.8
SMC4-211ENST00000469858 DEFB106AQ8N104 65 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 CMASQ8NFW8 434 aaPredicted RBP18.97■□□□□ 0.63
SMC4-211ENST00000469858 SEC14L1Q92503 715 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 DDX23Q9BUQ8 820 aaKnown RBP18.97■□□□□ 0.63
SMC4-211ENST00000469858 MRPL9Q9BYD2 267 aaKnown RBP18.97■□□□□ 0.63
SMC4-211ENST00000469858 C11orf49Q9H6J7 331 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 CSNK1G1Q9HCP0 422 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 HOMER3Q9NSC5 361 aa18.97■□□□□ 0.63
SMC4-211ENST00000469858 KIAA0100Q14667 2235 aaKnown RBP18.96■□□□□ 0.63
SMC4-211ENST00000469858 HHLA1C9JL84 531 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 MAP2K7O14733 419 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 UPP2O95045 317 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 ALDH2P05091 517 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 OR4Q2P0C623 313 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 MATKP42679 507 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 SLC11A1P49279 550 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 CCNG2Q16589 344 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 LRRC26Q2I0M4 334 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 CEP57Q86XR8 500 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 ANKLE1Q8NAG6 615 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 HAUS1Q96CS2 278 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 CCDC114Q96M63 670 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 C11orf84Q9BUA3 381 aaPredicted RBP18.96■□□□□ 0.63
SMC4-211ENST00000469858 CALN1Q9BXU9 219 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 ADAM33Q9BZ11 813 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 DMAP1Q9NPF5 467 aaPredicted RBP18.96■□□□□ 0.63
SMC4-211ENST00000469858 FAN1Q9Y2M0 1017 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 PATJQ8NI35 1801 aa18.96■□□□□ 0.63
SMC4-211ENST00000469858 DAB1O75553 588 aa18.95■□□□□ 0.62
SMC4-211ENST00000469858 FBXO21O94952 628 aa18.95■□□□□ 0.62
SMC4-211ENST00000469858 FAM153BP0C7A2 387 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms