RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 KATNBL1Q9H079 304 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 ARL2BPQ9Y2Y0 163 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 A8MUI8 341 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 PRPSAP2O60256 369 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 IGFBP6P24592 240 aaPredicted RBP19.93■□□□□ 0.78
VIM-203ENST00000469543 LMO2P25791 158 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 TNFAIP2Q03169 654 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 E2F5Q15329 346 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 LCLAT1Q6UWP7 414 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 PPP1R21Q6ZMI0 780 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 SESTD1Q86VW0 696 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 CEP57Q86XR8 500 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 FAM172AQ8WUF8 416 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 TBC1D31Q96DN5 1066 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 OSMRQ99650 979 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 CNPY3Q9BT09 278 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 GOLGA2P5Q9HBQ8 144 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 SLC17A7Q9P2U7 560 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 KCNN4O15554 427 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 RBL1P28749 1068 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 ATICP31939 592 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 INCA1Q0VD86 236 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 SNAPC2Q13487 334 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 PRPF39Q86UA1 669 aaKnown RBP19.93■□□□□ 0.78
VIM-203ENST00000469543 PLD5Q8N7P1 536 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 NXF3Q9H4D5 531 aaKnown RBP19.93■□□□□ 0.78
VIM-203ENST00000469543 RSAD1Q9HA92 442 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 RAB6BQ9NRW1 208 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 BAIAP2L1Q9UHR4 511 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 EFR3BQ9Y2G0 817 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 ACTL7BQ9Y614 415 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 CITO14578 2027 aa19.93■□□□□ 0.78
VIM-203ENST00000469543 MAGEB2O15479 319 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 PAPSS1O43252 624 aaPredicted RBP19.92■□□□□ 0.78
VIM-203ENST00000469543 YARSP54577 528 aaKnown RBP19.92■□□□□ 0.78
VIM-203ENST00000469543 GALNTL6Q49A17 601 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 DPP9Q86TI2 863 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 PDIK1LQ8N165 341 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 PQLC3Q8N755 202 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 TTC13Q8NBP0 860 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 OR6B3Q8NGW1 331 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 VRTNQ9H8Y1 702 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 CYP3A43Q9HB55 503 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 USP29Q9HBJ7 922 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 GBA2Q9HCG7 927 aaPredicted RBP19.92■□□□□ 0.78
VIM-203ENST00000469543 PSMC3IPQ9P2W1 217 aaPredicted RBP19.92■□□□□ 0.78
VIM-203ENST00000469543 HTTP42858 3142 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 CCDC130P13994 396 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 ROR1Q01973 937 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 OVGP1Q12889 678 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 HIC1Q14526 733 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 KRT81Q14533 505 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 KBTBD12Q3ZCT8 623 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 EFHC2Q5JST6 749 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 OLFML1Q6UWY5 402 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 TDRPQ86YL5 185 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 PCDH19Q8TAB3 1148 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 RNF157Q96PX1 679 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 ZMYND8Q9ULU4 1186 aaPredicted RBP19.92■□□□□ 0.78
VIM-203ENST00000469543 STK38LQ9Y2H1 464 aa19.92■□□□□ 0.78
VIM-203ENST00000469543 DICER1Q9UPY3 1922 aaKnown RBP19.91■□□□□ 0.78
VIM-203ENST00000469543 BTBD19C9JJ37 291 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 KBTBD13C9JR72 458 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 ENDOD1O94919 500 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 P4HA1P13674 534 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 GTF2A1P52655 376 aaPredicted RBP19.91■□□□□ 0.78
VIM-203ENST00000469543 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.91■□□□□ 0.78
VIM-203ENST00000469543 TCP10LQ8TDR4 215 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 RNF39Q9H2S5 420 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 KLHL14Q9P2G3 628 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 ITGA11Q9UKX5 1188 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 MFHAS1Q9Y4C4 1052 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 NUMBLQ9Y6R0 609 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 TCRBV9S1A1TA0A576 114 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 IGF2BP3O00425 579 aaKnown RBP eCLIP19.91■□□□□ 0.78
VIM-203ENST00000469543 ADORA2BP29275 332 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 BNIP1Q12981 228 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 RIBC1Q8N443 379 aaPredicted RBP19.91■□□□□ 0.78
VIM-203ENST00000469543 ATP11CQ8NB49 1132 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 CCDC110Q8TBZ0 833 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 FAF2Q96CS3 445 aa19.91■□□□□ 0.78
VIM-203ENST00000469543 MYO18AQ92614 2054 aaKnown RBP19.91■□□□□ 0.78
VIM-203ENST00000469543 SPARCL1Q14515 664 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 NOMO1Q15155 1222 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 SOWAHAQ2M3V2 549 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 PCGF5Q86SE9 256 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 DCAKDQ8WVC6 231 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 TMEM40Q8WWA1 233 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 TMPRSS4Q9NRS4 437 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 CACNG4Q9UBN1 327 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 C2CD2Q9Y426 696 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 MGRN1O60291 552 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 KRT16P08779 473 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 LCP1P13796 627 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 PCK1P35558 622 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 HDAC4P56524 1084 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 YWHAGP61981 247 aaKnown RBP eCLIP19.9■□□□□ 0.78
VIM-203ENST00000469543 ZNF200P98182 395 aaPredicted RBP19.9■□□□□ 0.78
VIM-203ENST00000469543 SNCBQ16143 134 aa19.9■□□□□ 0.78
VIM-203ENST00000469543 PLEKHG4Q58EX7 1191 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms