RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 TNFRSF10BO14763 440 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 AKAP3O75969 853 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 ASS1P00966 412 aaKnown RBP17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 MBL2P11226 248 aaPredicted RBP17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 SLC5A3P53794 718 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 DPYDQ12882 1025 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 GAB4Q2WGN9 574 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 SNX30Q5VWJ9 437 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 CACNA2D4Q7Z3S7 1137 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 UNC93AQ86WB7 457 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 ADGRG2Q8IZP9 1017 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 FUKQ8N0W3 1084 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 CRYBG2Q8N1P7 616 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 HHIPQ96QV1 700 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 RTKNQ9BST9 563 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 KRT82Q9NSB4 513 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 COMMD8Q9NX08 183 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 CFAP97Q9P2B7 532 aa17.58■□□□□ 0.4
CCDC28B-204ENST00000469003 AXIN1O15169 862 aa17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 AP1G2O75843 785 aa17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 HLA-DRAP01903 254 aa17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 CYP17A1P05093 508 aa17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 NR2F2P24468 414 aa17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 PIK3CAP42336 1068 aa17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 VAMP7P51809 220 aa17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 NDST1P52848 882 aa17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 DMC1Q14565 340 aa17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 HECTD3Q5T447 861 aa17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 KRBA2Q6ZNG9 492 aa17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 PRR23CQ6ZRP0 262 aa17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 GUF1Q8N442 669 aaKnown RBP17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 SCAMP5Q8TAC9 235 aa17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 LOXL4Q96JB6 756 aa17.57■□□□□ 0.4
CCDC28B-204ENST00000469003 CHD6Q8TD26 2715 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 SPAG17Q6Q759 2223 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 E2F8A0AVK6 867 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 FAM92AA1XBS5 289 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 COCHO43405 550 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 FOXD2O60548 495 aaPredicted RBP17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 APBB3O95704 486 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 ZDHHC11BP0C7U3 371 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 CCDC192P0DO97 292 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 CCDC130P13994 396 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 ASPAP45381 313 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 TUBP50607 506 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 ENPEPQ07075 957 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 ORC1Q13415 861 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 DHCR24Q15392 516 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 SPOPLQ6IQ16 392 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 INTS8Q75QN2 995 aaKnown RBP17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 KBTBD6Q86V97 674 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 ZMIZ2Q8NF64 920 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 NETO1Q8TDF5 533 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 USP33Q8TEY7 942 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 ZFRQ96KR1 1074 aaKnown RBP17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 SMOQ99835 787 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 GOLPH3LQ9H4A5 285 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 CSNK1G1Q9HCP0 422 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 TBC1D14Q9P2M4 693 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 HMGXB4Q9UGU5 601 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 EBF1Q9UH73 591 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 CHORDC1Q9UHD1 332 aaPredicted RBP17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 MYH10P35580 1976 aa17.56■□□□□ 0.4
CCDC28B-204ENST00000469003 CFAP47Q6ZTR5 3102 aa17.55■□□□□ 0.4
CCDC28B-204ENST00000469003 K7EQS6 105 aa17.55■□□□□ 0.4
CCDC28B-204ENST00000469003 EPN2O95208 641 aa17.55■□□□□ 0.4
CCDC28B-204ENST00000469003 KRT13P13646 458 aa17.55■□□□□ 0.4
CCDC28B-204ENST00000469003 RPL13P26373 211 aaKnown RBP17.55■□□□□ 0.4
CCDC28B-204ENST00000469003 EIF2DP41214 584 aaKnown RBP17.55■□□□□ 0.4
CCDC28B-204ENST00000469003 INCA1Q0VD86 236 aa17.55■□□□□ 0.4
CCDC28B-204ENST00000469003 ST3GAL2Q16842 350 aa17.55■□□□□ 0.4
CCDC28B-204ENST00000469003 FAM186BQ8IYM0 893 aa17.55■□□□□ 0.4
CCDC28B-204ENST00000469003 SLC2A14Q8TDB8 520 aa17.55■□□□□ 0.4
CCDC28B-204ENST00000469003 IMPG2Q9BZV3 1241 aa17.55■□□□□ 0.4
CCDC28B-204ENST00000469003 GMIPQ9P107 970 aa17.55■□□□□ 0.4
CCDC28B-204ENST00000469003 MAPK8IP1Q9UQF2 711 aa17.55■□□□□ 0.4
CCDC28B-204ENST00000469003 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 SCAMP3O14828 347 aaKnown RBP17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 SLC30A4O14863 429 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 BEST1O76090 585 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 ZNF202O95125 648 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 ADH1CP00326 375 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 TRIM49P0CI25 452 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 TRIM49CP0CI26 452 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 TRIM21P19474 475 aaKnown RBP17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 PSMC2P35998 433 aaKnown RBP17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 GCLMP48507 274 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 MAP3K7CLP57077 242 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 PPP3CAQ08209 521 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 RHBDF2Q6PJF5 856 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 C12orf29Q8N999 325 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 OTUB2Q96DC9 234 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 ZC3H10Q96K80 434 aaKnown RBP17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 DUSP9Q99956 384 aaKnown RBP17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 ARRDC1-AS1Q9H2J1 176 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 FBXO44Q9H4M3 255 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 CCSER2Q9H7U1 834 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 CYP3A43Q9HB55 503 aa17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 APOBEC3GQ9HC16 384 aaKnown RBP17.54■□□□□ 0.4
CCDC28B-204ENST00000469003 FAM49BQ9NUQ9 324 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms