RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 NDUFA8P51970 172 aa25.98■■□□□ 1.75
PTCH1-210ENST00000468211 SEC13P55735 322 aa25.98■■□□□ 1.75
PTCH1-210ENST00000468211 CEP135Q66GS9 1140 aa25.98■■□□□ 1.75
PTCH1-210ENST00000468211 RHBDF2Q6PJF5 856 aa25.98■■□□□ 1.75
PTCH1-210ENST00000468211 ZMIZ2Q8NF64 920 aa25.98■■□□□ 1.75
PTCH1-210ENST00000468211 USP33Q8TEY7 942 aa25.98■■□□□ 1.75
PTCH1-210ENST00000468211 SMOQ99835 787 aa25.98■■□□□ 1.75
PTCH1-210ENST00000468211 UTP3Q9NQZ2 479 aaKnown RBP eCLIP25.98■■□□□ 1.751e-16■■■■■ 250
PTCH1-210ENST00000468211 KRT82Q9NSB4 513 aa25.98■■□□□ 1.75
PTCH1-210ENST00000468211 MYO18AQ92614 2054 aaKnown RBP25.97■■□□□ 1.75
PTCH1-210ENST00000468211 ATP8B3O60423 1300 aa25.97■■□□□ 1.75
PTCH1-210ENST00000468211 FAM237AA0A1B0GTK4 181 aa25.97■■□□□ 1.75
PTCH1-210ENST00000468211 DCLK1O15075 740 aa25.97■■□□□ 1.75
PTCH1-210ENST00000468211 EPN2O95208 641 aa25.97■■□□□ 1.75
PTCH1-210ENST00000468211 SLC5A3P53794 718 aa25.97■■□□□ 1.75
PTCH1-210ENST00000468211 SGSM1Q2NKQ1 1148 aa25.97■■□□□ 1.75
PTCH1-210ENST00000468211 C2orf27AQ580R0 203 aa25.97■■□□□ 1.75
PTCH1-210ENST00000468211 C12orf40Q86WS4 652 aa25.97■■□□□ 1.75
PTCH1-210ENST00000468211 WBP2Q969T9 261 aa25.97■■□□□ 1.75
PTCH1-210ENST00000468211 ACDQ96AP0 544 aa25.97■■□□□ 1.75
PTCH1-210ENST00000468211 SMARCD1Q96GM5 515 aa25.97■■□□□ 1.75
PTCH1-210ENST00000468211 TNIP3Q96KP6 325 aa25.97■■□□□ 1.75
PTCH1-210ENST00000468211 CCSER2Q9H7U1 834 aa25.97■■□□□ 1.75
PTCH1-210ENST00000468211 DMAP1Q9NPF5 467 aaPredicted RBP25.97■■□□□ 1.75
PTCH1-210ENST00000468211 RXFP3Q9NSD7 469 aa25.97■■□□□ 1.75
PTCH1-210ENST00000468211 AP1G2O75843 785 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 AKAP3O75969 853 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 APBB3O95704 486 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 ASS1P00966 412 aaKnown RBP25.96■■□□□ 1.75
PTCH1-210ENST00000468211 CHRM1P11229 460 aaPredicted RBP25.96■■□□□ 1.75
PTCH1-210ENST00000468211 SYKP43405 635 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 ASPAP45381 313 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 NDST1P52848 882 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 PLK5Q496M5 336 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 KIAA1958Q8N8K9 716 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 C12orf29Q8N999 325 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 PDZD8Q8NEN9 1154 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 OVCA2Q8WZ82 227 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 LOXL4Q96JB6 756 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 ZC3H10Q96K80 434 aaKnown RBP25.96■■□□□ 1.75
PTCH1-210ENST00000468211 SMOC1Q9H4F8 434 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 GMIPQ9P107 970 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 MAPK8IP1Q9UQF2 711 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 TRAF3IP3Q9Y228 551 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 NUP205Q92621 2012 aa25.96■■□□□ 1.75
PTCH1-210ENST00000468211 LAMA1P25391 3075 aa25.95■■□□□ 1.75
PTCH1-210ENST00000468211 THADAQ6YHU6 1953 aa25.95■■□□□ 1.75
PTCH1-210ENST00000468211 HLA-DRAP01903 254 aa25.95■■□□□ 1.74
PTCH1-210ENST00000468211 MYL1P05976 194 aa25.95■■□□□ 1.74
PTCH1-210ENST00000468211 ZDHHC11BP0C7U3 371 aa25.95■■□□□ 1.74
PTCH1-210ENST00000468211 KRT85P78386 507 aa25.95■■□□□ 1.74
PTCH1-210ENST00000468211 DPYDQ12882 1025 aa25.95■■□□□ 1.74
PTCH1-210ENST00000468211 SNX30Q5VWJ9 437 aa25.95■■□□□ 1.74
PTCH1-210ENST00000468211 CRYBG2Q8N1P7 616 aa25.95■■□□□ 1.74
PTCH1-210ENST00000468211 CCDC33Q8N5R6 958 aa25.95■■□□□ 1.74
PTCH1-210ENST00000468211 SLC2A14Q8TDB8 520 aa25.95■■□□□ 1.74
PTCH1-210ENST00000468211 TWNKQ96RR1 684 aa25.95■■□□□ 1.74
PTCH1-210ENST00000468211 DUSP15Q9H1R2 295 aaPredicted RBP25.95■■□□□ 1.74
PTCH1-210ENST00000468211 GOLPH3LQ9H4A5 285 aa25.95■■□□□ 1.74
PTCH1-210ENST00000468211 FAM49BQ9NUQ9 324 aa25.95■■□□□ 1.74
PTCH1-210ENST00000468211 EBF1Q9UH73 591 aa25.95■■□□□ 1.74
PTCH1-210ENST00000468211 INVSQ9Y283 1065 aa25.95■■□□□ 1.74
PTCH1-210ENST00000468211 FAM92AA1XBS5 289 aa25.94■■□□□ 1.74
PTCH1-210ENST00000468211 SLC9A3R1O14745 358 aaPredicted RBP25.94■■□□□ 1.74
PTCH1-210ENST00000468211 IKBKBO14920 756 aa25.94■■□□□ 1.74
PTCH1-210ENST00000468211 RHOBTB3O94955 611 aa25.94■■□□□ 1.74
PTCH1-210ENST00000468211 HNRNPLP14866 589 aaKnown RBP eCLIP25.94■■□□□ 1.74
PTCH1-210ENST00000468211 HECTD3Q5T447 861 aa25.94■■□□□ 1.74
PTCH1-210ENST00000468211 FRMD4BQ9Y2L6 1034 aa25.94■■□□□ 1.74
PTCH1-210ENST00000468211 CALUO43852 315 aaPredicted RBP25.93■■□□□ 1.74
PTCH1-210ENST00000468211 ZNF806P0C7X5 589 aa25.93■■□□□ 1.74
PTCH1-210ENST00000468211 TRIM49P0CI25 452 aa25.93■■□□□ 1.74
PTCH1-210ENST00000468211 TRIM49CP0CI26 452 aa25.93■■□□□ 1.74
PTCH1-210ENST00000468211 P4HA1P13674 534 aa25.93■■□□□ 1.74
PTCH1-210ENST00000468211 PIK3CAP42336 1068 aa25.93■■□□□ 1.74
PTCH1-210ENST00000468211 VAMP7P51809 220 aa25.93■■□□□ 1.74
PTCH1-210ENST00000468211 DGKEP52429 567 aa25.93■■□□□ 1.74
PTCH1-210ENST00000468211 MAP3K7CLP57077 242 aa25.93■■□□□ 1.74
PTCH1-210ENST00000468211 PPP3CAQ08209 521 aa25.93■■□□□ 1.74
PTCH1-210ENST00000468211 PLA2G2CQ5R387 149 aa25.93■■□□□ 1.74
PTCH1-210ENST00000468211 LY6G5CQ5SRR4 150 aa25.93■■□□□ 1.74
PTCH1-210ENST00000468211 DDX42Q86XP3 938 aaKnown RBP eCLIP25.93■■□□□ 1.74
PTCH1-210ENST00000468211 TAF4BQ92750 862 aa25.93■■□□□ 1.74
PTCH1-210ENST00000468211 TPSD1Q9BZJ3 242 aa25.93■■□□□ 1.74
PTCH1-210ENST00000468211 APOBEC3GQ9HC16 384 aaKnown RBP25.93■■□□□ 1.74
PTCH1-210ENST00000468211 CSNK1G1Q9HCP0 422 aa25.93■■□□□ 1.74
PTCH1-210ENST00000468211 CNOT1A5YKK6 2376 aaKnown RBP25.93■■□□□ 1.74
PTCH1-210ENST00000468211 E2F8A0AVK6 867 aa25.92■■□□□ 1.74
PTCH1-210ENST00000468211 ADH5P11766 374 aa25.92■■□□□ 1.74
PTCH1-210ENST00000468211 NR2F2P24468 414 aa25.92■■□□□ 1.74
PTCH1-210ENST00000468211 GCLMP48507 274 aa25.92■■□□□ 1.74
PTCH1-210ENST00000468211 EMC10Q5UCC4 262 aa25.92■■□□□ 1.74
PTCH1-210ENST00000468211 TMEM92Q6UXU6 159 aa25.92■■□□□ 1.74
PTCH1-210ENST00000468211 KRBA2Q6ZNG9 492 aa25.92■■□□□ 1.74
PTCH1-210ENST00000468211 GPRIN1Q7Z2K8 1008 aa25.92■■□□□ 1.74
PTCH1-210ENST00000468211 UNC93AQ86WB7 457 aa25.92■■□□□ 1.74
PTCH1-210ENST00000468211 TSTD1Q8NFU3 115 aa25.92■■□□□ 1.74
PTCH1-210ENST00000468211 PNKPQ96T60 521 aa25.92■■□□□ 1.74
PTCH1-210ENST00000468211 ZDHHC4Q9NPG8 344 aa25.92■■□□□ 1.74
PTCH1-210ENST00000468211 MMP17Q9ULZ9 603 aa25.92■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms