RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 FSTL4Q6MZW2 842 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 FBXL13Q8NEE6 735 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 CCDC26Q8TAB7 109 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 SCAMP5Q8TAC9 235 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 CHFRQ96EP1 664 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 HNRNPABQ99729 332 aaKnown RBP20.21■□□□□ 0.83
COL7A1-207ENST00000467985 FAM124BQ9H5Z6 455 aaPredicted RBP20.21■□□□□ 0.83
COL7A1-207ENST00000467985 APOBEC3GQ9HC16 384 aaKnown RBP20.21■□□□□ 0.83
COL7A1-207ENST00000467985 NCDNQ9UBB6 729 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 RAB23Q9ULC3 237 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 SMG5Q9UPR3 1016 aaKnown RBP20.21■□□□□ 0.83
COL7A1-207ENST00000467985 CPQQ9Y646 472 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 K7ESF4 209 aa20.2■□□□□ 0.82
COL7A1-207ENST00000467985 CILPO75339 1184 aa20.2■□□□□ 0.82
COL7A1-207ENST00000467985 CNR2P34972 360 aa20.2■□□□□ 0.82
COL7A1-207ENST00000467985 PPP1R2P41236 205 aa20.2■□□□□ 0.82
COL7A1-207ENST00000467985 GALK1P51570 392 aa20.2■□□□□ 0.82
COL7A1-207ENST00000467985 ZXDBP98169 803 aa20.2■□□□□ 0.82
COL7A1-207ENST00000467985 LONP2Q86WA8 852 aa20.2■□□□□ 0.82
COL7A1-207ENST00000467985 ZC3H3Q8IXZ2 948 aaKnown RBP20.2■□□□□ 0.82
COL7A1-207ENST00000467985 C12orf29Q8N999 325 aa20.2■□□□□ 0.82
COL7A1-207ENST00000467985 EEF2KMTQ96G04 330 aa20.2■□□□□ 0.82
COL7A1-207ENST00000467985 SMOQ99835 787 aa20.2■□□□□ 0.82
COL7A1-207ENST00000467985 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.2■□□□□ 0.82
COL7A1-207ENST00000467985 FAM49BQ9NUQ9 324 aa20.2■□□□□ 0.82
COL7A1-207ENST00000467985 RAB20Q9NX57 234 aa20.2■□□□□ 0.82
COL7A1-207ENST00000467985 CHURC1-FNTBB4DL54 471 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 PSMA7O14818 248 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 ZDHHC11BP0C7U3 371 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 MBL2P11226 248 aaPredicted RBP20.19■□□□□ 0.82
COL7A1-207ENST00000467985 MAP3K7CLP57077 242 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 FILIP1Q7Z7B0 1213 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 GPR161Q8N6U8 529 aaKnown RBP20.19■□□□□ 0.82
COL7A1-207ENST00000467985 ZMIZ2Q8NF64 920 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 CD101Q93033 1021 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 CYFIP2Q96F07 1278 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 LINC00597Q9H2U6 94 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 PNPLA8Q9NP80 782 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 SMPD4Q9NXE4 827 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 CFAP97Q9P2B7 532 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 TBC1D14Q9P2M4 693 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 CHORDC1Q9UHD1 332 aaPredicted RBP20.19■□□□□ 0.82
COL7A1-207ENST00000467985 DCHS1Q96JQ0 3298 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 MYH10P35580 1976 aa20.19■□□□□ 0.82
COL7A1-207ENST00000467985 E2F8A0AVK6 867 aa20.18■□□□□ 0.82
COL7A1-207ENST00000467985 COCHO43405 550 aa20.18■□□□□ 0.82
COL7A1-207ENST00000467985 EGFP01133 1207 aa20.18■□□□□ 0.82
COL7A1-207ENST00000467985 CD58P19256 250 aa20.18■□□□□ 0.82
COL7A1-207ENST00000467985 ADORA2BP29275 332 aa20.18■□□□□ 0.82
COL7A1-207ENST00000467985 TCERG1LQ5VWI1 586 aa20.18■□□□□ 0.82
COL7A1-207ENST00000467985 ANKRD40Q6AI12 368 aa20.18■□□□□ 0.82
COL7A1-207ENST00000467985 TWNKQ96RR1 684 aa20.18■□□□□ 0.82
COL7A1-207ENST00000467985 NACA2Q9H009 215 aa20.18■□□□□ 0.82
COL7A1-207ENST00000467985 FBRSL1Q9HCM7 1045 aaKnown RBP20.18■□□□□ 0.82
COL7A1-207ENST00000467985 TLR8Q9NR97 1041 aaKnown RBP20.18■□□□□ 0.82
COL7A1-207ENST00000467985 GMIPQ9P107 970 aa20.18■□□□□ 0.82
COL7A1-207ENST00000467985 ARMCX3Q9UH62 379 aaPredicted RBP20.18■□□□□ 0.82
COL7A1-207ENST00000467985 RNF40O75150 1001 aa20.17■□□□□ 0.82
COL7A1-207ENST00000467985 BEST1O76090 585 aa20.17■□□□□ 0.82
COL7A1-207ENST00000467985 FNTBP49356 437 aa20.17■□□□□ 0.82
COL7A1-207ENST00000467985 DCAF17Q5H9S7 520 aaPredicted RBP20.17■□□□□ 0.82
COL7A1-207ENST00000467985 CLEC20AQ6ZU45 233 aa20.17■□□□□ 0.82
COL7A1-207ENST00000467985 ADGRG2Q8IZP9 1017 aa20.17■□□□□ 0.82
COL7A1-207ENST00000467985 SEMA4DQ92854 862 aa20.17■□□□□ 0.82
COL7A1-207ENST00000467985 OTUB2Q96DC9 234 aa20.17■□□□□ 0.82
COL7A1-207ENST00000467985 DHTKD1Q96HY7 919 aaPredicted RBP20.17■□□□□ 0.82
COL7A1-207ENST00000467985 SLC8A2Q9UPR5 921 aa20.17■□□□□ 0.82
COL7A1-207ENST00000467985 CEP250Q9BV73 2442 aa20.17■□□□□ 0.82
COL7A1-207ENST00000467985 CCDC163A0A0D9SF12 145 aa20.16■□□□□ 0.82
COL7A1-207ENST00000467985 ADH1CP00326 375 aa20.16■□□□□ 0.82
COL7A1-207ENST00000467985 LAIR1Q6GTX8 287 aa20.16■□□□□ 0.82
COL7A1-207ENST00000467985 WDR5BQ86VZ2 330 aa20.16■□□□□ 0.82
COL7A1-207ENST00000467985 KIAA2013Q8IYS2 634 aa20.16■□□□□ 0.82
COL7A1-207ENST00000467985 WHAMMQ8TF30 809 aa20.16■□□□□ 0.82
COL7A1-207ENST00000467985 ERCC4Q92889 916 aaPredicted RBP20.16■□□□□ 0.82
COL7A1-207ENST00000467985 DUSP9Q99956 384 aaKnown RBP20.16■□□□□ 0.82
COL7A1-207ENST00000467985 CCSER2Q9H7U1 834 aa20.16■□□□□ 0.82
COL7A1-207ENST00000467985 METTL14Q9HCE5 456 aaKnown RBP20.16■□□□□ 0.82
COL7A1-207ENST00000467985 CISHQ9NSE2 258 aa20.16■□□□□ 0.82
COL7A1-207ENST00000467985 C2orf42Q9NWW7 574 aa20.16■□□□□ 0.82
COL7A1-207ENST00000467985 GMEB2Q9UKD1 530 aa20.16■□□□□ 0.82
COL7A1-207ENST00000467985 SCML2Q9UQR0 700 aa20.16■□□□□ 0.82
COL7A1-207ENST00000467985 COQ4Q9Y3A0 265 aa20.16■□□□□ 0.82
COL7A1-207ENST00000467985 CACNA1AO00555 2505 aa20.16■□□□□ 0.82
COL7A1-207ENST00000467985 CYP17A1P05093 508 aa20.15■□□□□ 0.82
COL7A1-207ENST00000467985 HEATR6Q6AI08 1181 aaKnown RBP20.15■□□□□ 0.82
COL7A1-207ENST00000467985 DCLK2Q8N568 766 aa20.15■□□□□ 0.82
COL7A1-207ENST00000467985 CAMKK1Q8N5S9 505 aa20.15■□□□□ 0.82
COL7A1-207ENST00000467985 ACDQ96AP0 544 aa20.15■□□□□ 0.82
COL7A1-207ENST00000467985 ZFRQ96KR1 1074 aaKnown RBP20.15■□□□□ 0.82
COL7A1-207ENST00000467985 HEXIM2Q96MH2 286 aaKnown RBP20.15■□□□□ 0.82
COL7A1-207ENST00000467985 CEP63Q96MT8 703 aa20.15■□□□□ 0.82
COL7A1-207ENST00000467985 DUSP16Q9BY84 665 aa20.15■□□□□ 0.82
COL7A1-207ENST00000467985 SH3BP1Q9Y3L3 701 aa20.15■□□□□ 0.82
COL7A1-207ENST00000467985 TLR5O60602 858 aa20.14■□□□□ 0.81
COL7A1-207ENST00000467985 ACO1P21399 889 aaKnown RBP20.14■□□□□ 0.81
COL7A1-207ENST00000467985 EIF2DP41214 584 aaKnown RBP20.14■□□□□ 0.81
COL7A1-207ENST00000467985 PMS1P54277 932 aaKnown RBP20.14■□□□□ 0.81
COL7A1-207ENST00000467985 GOLGA8FQ08AF8 430 aa20.14■□□□□ 0.81
COL7A1-207ENST00000467985 DMWDQ09019 674 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms