RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 DDX42Q86XP3 938 aaKnown RBP eCLIP24.04■■□□□ 1.44
USP4-208ENST00000464168 ZFRQ96KR1 1074 aaKnown RBP24.04■■□□□ 1.44
USP4-208ENST00000464168 KCNK16Q96T55 309 aa24.04■■□□□ 1.44
USP4-208ENST00000464168 TBC1D14Q9P2M4 693 aa24.04■■□□□ 1.44
USP4-208ENST00000464168 UBE4BO95155 1302 aa24.04■■□□□ 1.44
USP4-208ENST00000464168 IGF2RP11717 2491 aa24.04■■□□□ 1.44
USP4-208ENST00000464168 ZZEF1O43149 2961 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 NUP205Q92621 2012 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 E2F8A0AVK6 867 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 COCHO43405 550 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 RTN3O95197 1032 aaPredicted RBP24.03■■□□□ 1.44
USP4-208ENST00000464168 CENPBP07199 599 aaPredicted RBP24.03■■□□□ 1.44
USP4-208ENST00000464168 ADH5P11766 374 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 CASP1P29466 404 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 ATICP31939 592 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 P2RY2P41231 377 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 GRIA2P42262 883 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 DHPSP49366 369 aaPredicted RBP24.03■■□□□ 1.44
USP4-208ENST00000464168 IRX4P78413 519 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 HSF5Q4G112 596 aaPredicted RBP24.03■■□□□ 1.44
USP4-208ENST00000464168 LY6G5CQ5SRR4 150 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 UNC13DQ70J99 1090 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 C12orf56Q8IXR9 622 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 SCAMP5Q8TAC9 235 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 RLN3Q8WXF3 142 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 OVCA2Q8WZ82 227 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 FBXO32Q969P5 355 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 SYAP1Q96A49 352 aaPredicted RBP24.03■■□□□ 1.44
USP4-208ENST00000464168 ARHGEF4Q9NR80 690 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 CHORDC1Q9UHD1 332 aaPredicted RBP24.03■■□□□ 1.44
USP4-208ENST00000464168 THADAQ6YHU6 1953 aa24.03■■□□□ 1.44
USP4-208ENST00000464168 TNFRSF10BO14763 440 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 CUTAO60888 179 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 ADAM23O75077 832 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 TNFRSF4P43489 277 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 CASP4P49662 377 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 CDH8P55286 799 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 BMT2Q1RMZ1 405 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 PAQR9Q6ZVX9 377 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 PHTF2Q8N3S3 785 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 PDZD8Q8NEN9 1154 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 PLEKHO2Q8TD55 490 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 PIGKQ92643 395 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 ZNF396Q96N95 335 aaPredicted RBP24.02■■□□□ 1.44
USP4-208ENST00000464168 SMYD3Q9H7B4 428 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 VRTNQ9H8Y1 702 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 TMEM9BQ9NQ34 198 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 IL37Q9NZH6 218 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 MYOFQ9NZM1 2061 aa24.02■■□□□ 1.44
USP4-208ENST00000464168 PHACTR2O75167 634 aa24.01■■□□□ 1.43
USP4-208ENST00000464168 YEATS4O95619 227 aa24.01■■□□□ 1.43
USP4-208ENST00000464168 KDSRQ06136 332 aa24.01■■□□□ 1.43
USP4-208ENST00000464168 EOGTQ5NDL2 527 aa24.01■■□□□ 1.43
USP4-208ENST00000464168 HECTD3Q5T447 861 aa24.01■■□□□ 1.43
USP4-208ENST00000464168 SH3PXD2AQ5TCZ1 1133 aa24.01■■□□□ 1.43
USP4-208ENST00000464168 SNX30Q5VWJ9 437 aa24.01■■□□□ 1.43
USP4-208ENST00000464168 FRMD1Q8N878 549 aa24.01■■□□□ 1.43
USP4-208ENST00000464168 WHAMMQ8TF30 809 aa24.01■■□□□ 1.43
USP4-208ENST00000464168 OTUB2Q96DC9 234 aa24.01■■□□□ 1.43
USP4-208ENST00000464168 BLZF1Q9H2G9 400 aa24.01■■□□□ 1.43
USP4-208ENST00000464168 SLC39A2Q9NP94 309 aa24.01■■□□□ 1.43
USP4-208ENST00000464168 ZDHHC4Q9NPG8 344 aa24.01■■□□□ 1.43
USP4-208ENST00000464168 CGNQ9P2M7 1197 aaKnown RBP24.01■■□□□ 1.43
USP4-208ENST00000464168 PALM2-AKAP2B1ALY0 433 aaPredicted RBP24■■□□□ 1.43
USP4-208ENST00000464168 POLR2DO15514 142 aaKnown RBP24■■□□□ 1.43
USP4-208ENST00000464168 LPCAT2Q7L5N7 544 aa24■■□□□ 1.43
USP4-208ENST00000464168 FAM35AQ86V20 835 aa24■■□□□ 1.43
USP4-208ENST00000464168 ETFBKMTQ8IXQ9 262 aa24■■□□□ 1.43
USP4-208ENST00000464168 ELMO3Q96BJ8 720 aa24■■□□□ 1.43
USP4-208ENST00000464168 CCSER2Q9H7U1 834 aa24■■□□□ 1.43
USP4-208ENST00000464168 MAGEF1Q9HAY2 307 aa24■■□□□ 1.43
USP4-208ENST00000464168 POLMQ9NP87 494 aaPredicted RBP24■■□□□ 1.43
USP4-208ENST00000464168 MBD1Q9UIS9 605 aaPredicted RBP24■■□□□ 1.43
USP4-208ENST00000464168 CIZ1Q9ULV3 898 aaPredicted RBP24■■□□□ 1.43
USP4-208ENST00000464168 ASPMQ8IZT6 3477 aa24■■□□□ 1.43
USP4-208ENST00000464168 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa23.99■■□□□ 1.43
USP4-208ENST00000464168 MAP3K13O43283 966 aa23.99■■□□□ 1.43
USP4-208ENST00000464168 EXOC3O60645 756 aa23.99■■□□□ 1.43
USP4-208ENST00000464168 ZDHHC11BP0C7U3 371 aa23.99■■□□□ 1.43
USP4-208ENST00000464168 SLC5A3P53794 718 aa23.99■■□□□ 1.43
USP4-208ENST00000464168 GAD2Q05329 585 aa23.99■■□□□ 1.43
USP4-208ENST00000464168 KNOP1Q1ED39 458 aaKnown RBP23.99■■□□□ 1.43
USP4-208ENST00000464168 MAP7D1Q3KQU3 841 aa23.99■■□□□ 1.43
USP4-208ENST00000464168 TMEFF1Q8IYR6 380 aa23.99■■□□□ 1.43
USP4-208ENST00000464168 PARD3BQ8TEW8 1205 aa23.99■■□□□ 1.43
USP4-208ENST00000464168 HMGB4Q8WW32 186 aa23.99■■□□□ 1.43
USP4-208ENST00000464168 MED10Q9BTT4 135 aa23.99■■□□□ 1.43
USP4-208ENST00000464168 EVLQ9UI08 416 aaPredicted RBP23.99■■□□□ 1.43
USP4-208ENST00000464168 WASF3Q9UPY6 502 aa23.99■■□□□ 1.43
USP4-208ENST00000464168 CACNA1GO43497 2377 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 PVALEFA0A1B0GWK0 134 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 FAM92AA1XBS5 289 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 TBC1D3BA6NDS4 549 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 K7ELQ4 463 aaPredicted RBP23.98■■□□□ 1.43
USP4-208ENST00000464168 HOXC11O43248 304 aaPredicted RBP23.98■■□□□ 1.43
USP4-208ENST00000464168 CSRP1P21291 193 aaKnown RBP23.98■■□□□ 1.43
USP4-208ENST00000464168 PTGER3P43115 390 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 TUBP50607 506 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 CLDN10P78369 228 aa23.98■■□□□ 1.43
USP4-208ENST00000464168 ZNF252P-AS1Q0IIN9 211 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms