RNA–Protein interactions for RNA: ENST00000463631.1

HMGN1-209, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 583 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-209ENST00000463631 RLN3Q8WXF3 142 aa18.4■□□□□ 0.54
HMGN1-209ENST00000463631 ZFRQ96KR1 1074 aaKnown RBP18.4■□□□□ 0.54
HMGN1-209ENST00000463631 SCNM1Q9BWG6 230 aa18.4■□□□□ 0.54
HMGN1-209ENST00000463631 NUSAP1Q9BXS6 441 aaKnown RBP18.4■□□□□ 0.54
HMGN1-209ENST00000463631 SNX25Q9H3E2 840 aa18.4■□□□□ 0.54
HMGN1-209ENST00000463631 MBD1Q9UIS9 605 aaPredicted RBP18.4■□□□□ 0.54
HMGN1-209ENST00000463631 RALYQ9UKM9 306 aaKnown RBP18.4■□□□□ 0.54
HMGN1-209ENST00000463631 PCDH15Q96QU1 1955 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 EIF3DO15371 548 aaKnown RBP eCLIP18.39■□□□□ 0.53
HMGN1-209ENST00000463631 STAU1O95793 577 aaKnown RBP18.39■□□□□ 0.53
HMGN1-209ENST00000463631 MBL2P11226 248 aaPredicted RBP18.39■□□□□ 0.53
HMGN1-209ENST00000463631 PTPN1P18031 435 aaKnown RBP18.39■□□□□ 0.53
HMGN1-209ENST00000463631 SPINK2P20155 84 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 TIE1P35590 1138 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 TUBP50607 506 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 CUL4AQ13619 759 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 SNRNP35Q16560 246 aaKnown RBP18.39■□□□□ 0.53
HMGN1-209ENST00000463631 LYSMD4Q5XG99 296 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 HS2ST1Q7LGA3 356 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 TTC30AQ86WT1 665 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 ETFBKMTQ8IXQ9 262 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 DEFB124Q8NES8 71 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 ZNF518BQ9C0D4 1074 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 TNMDQ9H2S6 317 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 TMEM74BQ9NUR3 256 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 BCCIPQ9P287 314 aaKnown RBP eCLIP18.39■□□□□ 0.53
HMGN1-209ENST00000463631 PILRBQ9UKJ0 227 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 NEUROG3Q9Y4Z2 214 aa18.39■□□□□ 0.53
HMGN1-209ENST00000463631 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 SCAMP3O14828 347 aaKnown RBP18.38■□□□□ 0.53
HMGN1-209ENST00000463631 HOXC11O43248 304 aaPredicted RBP18.38■□□□□ 0.53
HMGN1-209ENST00000463631 MAP3K13O43283 966 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 RTN3O95197 1032 aaPredicted RBP18.38■□□□□ 0.53
HMGN1-209ENST00000463631 TOP3BO95985 862 aaKnown RBP18.38■□□□□ 0.53
HMGN1-209ENST00000463631 ENGP17813 658 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 YWHAQP27348 245 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 KDSRQ06136 332 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 SLC39A14Q15043 492 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 UAP1L1Q3KQV9 507 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 LY6G5CQ5SRR4 150 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 SNX30Q5VWJ9 437 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 EPM2AIP1Q7L775 607 aaPredicted RBP18.38■□□□□ 0.53
HMGN1-209ENST00000463631 TRMT11Q7Z4G4 463 aaKnown RBP18.38■□□□□ 0.53
HMGN1-209ENST00000463631 PIP4P1Q86T03 277 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 TMEFF1Q8IYR6 380 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 NUP93Q8N1F7 819 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 B3GALNT2Q8NCR0 500 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 OR6B3Q8NGW1 331 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 HMGB4Q8WW32 186 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 CGRRF1Q99675 332 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 SLC32A1Q9H598 525 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 CEP192Q8TEP8 1941 aa18.38■□□□□ 0.53
HMGN1-209ENST00000463631 TCRBV21S2A2A0A5A6 115 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 ABL1P00519 1130 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 TNNC1P63316 161 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 GAD2Q05329 585 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 SEMA3BQ13214 749 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 PSMD6Q15008 389 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 WDR72Q3MJ13 1102 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 PREPLQ4J6C6 727 aaPredicted RBP18.37■□□□□ 0.53
HMGN1-209ENST00000463631 EMC10Q5UCC4 262 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 FAM173BQ6P4H8 233 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 ARMCX6Q7L4S7 300 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 FRMD1Q8N878 549 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 B3GNT5Q9BYG0 378 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 TRIM9Q9C026 710 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 LRRC27Q9C0I9 530 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 DPEP3Q9H4B8 488 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 UPF2Q9HAU5 1272 aaKnown RBP18.37■□□□□ 0.53
HMGN1-209ENST00000463631 AGPAT3Q9NRZ7 376 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 KBTBD4Q9NVX7 518 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 IL37Q9NZH6 218 aa18.37■□□□□ 0.53
HMGN1-209ENST00000463631 NBEAQ8NFP9 2946 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 FAM92AA1XBS5 289 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 AP5Z1O43299 807 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 COCHO43405 550 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 TULP3O75386 442 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 UBE4BO95155 1302 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 CST3P01034 146 aaPredicted RBP18.36■□□□□ 0.53
HMGN1-209ENST00000463631 DLATP10515 647 aaKnown RBP18.36■□□□□ 0.53
HMGN1-209ENST00000463631 TNNI1P19237 187 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 MAPK8P45983 427 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 SNRPFP62306 86 aaKnown RBP18.36■□□□□ 0.53
HMGN1-209ENST00000463631 CEBPZQ03701 1054 aaKnown RBP18.36■□□□□ 0.53
HMGN1-209ENST00000463631 CYP24A1Q07973 514 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 E2F4Q16254 413 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 FREM2Q5SZK8 3169 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 CNNM4Q6P4Q7 775 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 RABEPKQ7Z6M1 372 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 CEP76Q8TAP6 659 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 ZNF507Q8TCN5 953 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 HPS3Q969F9 1004 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 FBXO32Q969P5 355 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 USP28Q96RU2 1077 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 PANK2Q9BZ23 570 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 GZF1Q9H116 711 aaPredicted RBP18.36■□□□□ 0.53
HMGN1-209ENST00000463631 XYLT2Q9H1B5 865 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 CUEDC2Q9H467 287 aa18.36■□□□□ 0.53
HMGN1-209ENST00000463631 CIZ1Q9ULV3 898 aaPredicted RBP18.36■□□□□ 0.53
HMGN1-209ENST00000463631 ATP8B3O60423 1300 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms