RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 RAB41Q5JT25 222 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 TADA2BQ86TJ2 420 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 TTC30AQ86WT1 665 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 YAF2Q8IY57 180 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 SCML4Q8N228 414 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 ZNF276Q8N554 614 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 SCAMP5Q8TAC9 235 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 BPIFB1Q8TDL5 484 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 SHDQ96IW2 340 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 RPP25Q9BUL9 199 aaKnown RBP12.51□□□□□ -0.41
VPS52-213ENST00000461743 SMOC2Q9H3U7 446 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 BRD9Q9H8M2 597 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 TRPC7Q9HCX4 862 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 THG1LQ9NWX6 298 aaKnown RBP12.51□□□□□ -0.41
VPS52-213ENST00000461743 USP3Q9Y6I4 520 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 MYOFQ9NZM1 2061 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 BECN2A8MW95 431 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 M0QYV0 167 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 ARNTLO00327 626 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 ZNF263O14978 683 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 CFHP08603 1231 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 CDK11BP21127 795 aaKnown RBP12.5□□□□□ -0.41
VPS52-213ENST00000461743 GNA15P30679 374 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 VIPR2P41587 438 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 TPM4P67936 248 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 IFRD2Q12894 506 aaPredicted RBP12.5□□□□□ -0.41
VPS52-213ENST00000461743 MLF2Q15773 248 aaPredicted RBP12.5□□□□□ -0.41
VPS52-213ENST00000461743 ZSCAN23Q3MJ62 389 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 HECTD3Q5T447 861 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 KLHDC7AQ5VTJ3 777 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 KLHDC10Q6PID8 442 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 GPRIN1Q7Z2K8 1008 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 PIGZQ86VD9 579 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 SUGP1Q8IWZ8 645 aaKnown RBP12.5□□□□□ -0.41
VPS52-213ENST00000461743 DHX40Q8IX18 779 aaKnown RBP12.5□□□□□ -0.41
VPS52-213ENST00000461743 ARHGAP18Q8N392 663 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 FBXL6Q8N531 539 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 KCTD13Q8WZ19 329 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 USP13Q92995 863 aaPredicted RBP12.5□□□□□ -0.41
VPS52-213ENST00000461743 PLA2G2FQ9BZM2 168 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 HSD3B7Q9H2F3 369 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 CYLDQ9NQC7 956 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 GMIPQ9P107 970 aa12.5□□□□□ -0.41
VPS52-213ENST00000461743 MUC6Q6W4X9 2439 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 C2orf78A6NCI8 922 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 FAM86C2PA6NEL3 165 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 CYP26A1O43174 497 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 UCHL3P15374 230 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 HDCP19113 662 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 BRD2P25440 801 aaKnown RBP12.49□□□□□ -0.41
VPS52-213ENST00000461743 GDI1P31150 447 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 NUBP1P53384 320 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 BPIFB4P59827 614 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 GPC5P78333 572 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 PDE4CQ08493 712 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 KCNMA1Q12791 1236 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 GRM2Q14416 872 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 MTF1Q14872 753 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 DPY19L2P1Q6NXN4 242 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 TFAP2BQ92481 460 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 PBXIP1Q96AQ6 731 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 RSPRY1Q96DX4 576 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 HSFY1Q96LI6 401 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 ERGIC2Q96RQ1 377 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 LRFN3Q9BTN0 628 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 DDX23Q9BUQ8 820 aaKnown RBP12.49□□□□□ -0.41
VPS52-213ENST00000461743 LSM14BQ9BX40 385 aaKnown RBP12.49□□□□□ -0.41
VPS52-213ENST00000461743 NAA15Q9BXJ9 866 aaKnown RBP12.49□□□□□ -0.41
VPS52-213ENST00000461743 VPS16Q9H269 839 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 MFSD1Q9H3U5 465 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 CNGB3Q9NQW8 809 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 CLIC5Q9NZA1 410 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 DNAJC12Q9UKB3 198 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 FANCMQ8IYD8 2048 aa12.49□□□□□ -0.41
VPS52-213ENST00000461743 RNF225M0QZC1 329 aaPredicted RBP12.48□□□□□ -0.41
VPS52-213ENST00000461743 SART1O43290 800 aaKnown RBP12.48□□□□□ -0.41
VPS52-213ENST00000461743 TLR5O60602 858 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 FBXO21O94952 628 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 CLCN5P51795 746 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 STARD6P59095 220 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 PTK2Q05397 1052 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 GOLGA8FQ08AF8 430 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 GOLGA8DPQ0D2H9 430 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 IQCB1Q15051 598 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 PDGFRLQ15198 375 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 ARHGAP44Q17R89 818 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 PM20D1Q6GTS8 502 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 CC2D1AQ6P1N0 951 aaPredicted RBP12.48□□□□□ -0.41
VPS52-213ENST00000461743 GJB7Q6PEY0 223 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 HFE2Q6ZVN8 426 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 APTXQ7Z2E3 356 aaKnown RBP12.48□□□□□ -0.41
VPS52-213ENST00000461743 FAM71AQ8IYT1 594 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 SIX5Q8N196 739 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 SIX6OS1Q8N1H7 587 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 ARL14EPQ8N8R7 260 aaPredicted RBP12.48□□□□□ -0.41
VPS52-213ENST00000461743 CSGALNACT1Q8TDX6 532 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 STK32AQ8WU08 396 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 SLC22A12Q96S37 553 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 OSBPL6Q9BZF3 934 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 KCNH6Q9H252 994 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms