RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 NQO1P15559 274 aaKnown RBP12.1□□□□□ -0.47
NPHP4-204ENST00000460696 ARID3BQ8IVW6 561 aaPredicted RBP12.1□□□□□ -0.47
NPHP4-204ENST00000460696 GABPB2Q8TAK5 448 aaPredicted RBP12.1□□□□□ -0.47
NPHP4-204ENST00000460696 DDX27Q96GQ7 796 aaKnown RBP12.1□□□□□ -0.47
NPHP4-204ENST00000460696 FAM193BQ96PV7 902 aaPredicted RBP12.1□□□□□ -0.47
NPHP4-204ENST00000460696 GPR88Q9GZN0 384 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 SENP6Q9GZR1 1112 aaPredicted RBP12.1□□□□□ -0.47
NPHP4-204ENST00000460696 ZDHHC18Q9NUE0 388 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 BTBD7Q9P203 1132 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 APOBEC2Q9Y235 224 aaKnown RBP12.1□□□□□ -0.47
NPHP4-204ENST00000460696 LTBP3Q9NS15 1303 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 SPDYE5A6NIY4 337 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 CRCPO75575 148 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 SLC4A1P02730 911 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 PDHA1P08559 390 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 GCKP35557 465 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 ALDH18A1P54886 795 aaKnown RBP12.1□□□□□ -0.47
NPHP4-204ENST00000460696 ZNF268Q14587 947 aaPredicted RBP12.1□□□□□ -0.47
NPHP4-204ENST00000460696 PTPN20Q4JDL3 420 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 NOTUMQ6P988 496 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 LBX2Q6XYB7 198 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 MON1BQ7L1V2 547 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 NLRP9Q7RTR0 991 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 FUKQ8N0W3 1084 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 C12orf29Q8N999 325 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 TCP10LQ8TDR4 215 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 USP33Q8TEY7 942 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 RNF139Q8WU17 664 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 CYP4F11Q9HBI6 524 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 SPECC1L-ADORA2AF8WAN1 911 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 CFLARO15519 480 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 FSBPO95073 299 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 PYGBP11216 843 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 UNGP13051 313 aaPredicted RBP12.1□□□□□ -0.47
NPHP4-204ENST00000460696 DEUP1Q05D60 604 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 PLEKHA7Q6IQ23 1121 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 VCXQ9H320 206 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 SLCO1B3Q9NPD5 702 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 HEY2Q9UBP5 337 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 SIGLEC16A6NMB1 481 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 ADRA1DP25100 572 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 HADHBP55084 474 aaKnown RBP12.09□□□□□ -0.47
NPHP4-204ENST00000460696 INHBEP58166 350 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 BEX3Q00994 111 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 DENND5BQ6ZUT9 1274 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 SLC7A14Q8TBB6 771 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 CYP3A43Q9HB55 503 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 SNCAIPQ9Y6H5 919 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 LGALS2P05162 132 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 RPA3P35244 121 aaPredicted RBP12.09□□□□□ -0.47
NPHP4-204ENST00000460696 RPL22P35268 128 aaKnown RBP12.09□□□□□ -0.47
NPHP4-204ENST00000460696 TPI1P60174 286 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 CACNB2Q08289 660 aaPredicted RBP12.09□□□□□ -0.47
NPHP4-204ENST00000460696 FSTL1Q12841 308 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 THOC5Q13769 683 aaKnown RBP12.09□□□□□ -0.47
NPHP4-204ENST00000460696 ABI1Q8IZP0 508 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 CENPTQ96BT3 561 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 CCDC124Q96CT7 223 aaKnown RBP12.09□□□□□ -0.47
NPHP4-204ENST00000460696 PPP1R36Q96LQ0 422 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 TTC1Q99614 292 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 PPCSQ9HAB8 311 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 SLC24A2Q9UI40 661 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 L3MBTL1Q9Y468 752 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 hCG_1818297A0A087WSY0 165 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 M0QYT0 321 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 GNAT1P11488 350 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 ARL2P36404 184 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 FASTKD3Q14CZ7 662 aaKnown RBP12.09□□□□□ -0.47
NPHP4-204ENST00000460696 CKAP2Q8WWK9 683 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 ASB7Q9H672 318 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 HMX1Q9NP08 348 aaPredicted RBP12.09□□□□□ -0.47
NPHP4-204ENST00000460696 SLC12A6Q9UHW9 1150 aa12.09□□□□□ -0.47
NPHP4-204ENST00000460696 GPC4O75487 556 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 VNN1O95497 513 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 GSTA1P08263 222 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 GSTA2P09210 222 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 MCF2P10911 925 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 RBL1P28749 1068 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 FKBP1BP68106 108 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 STX3Q13277 289 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 CHI3L2Q15782 390 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 PAN2Q504Q3 1202 aaKnown RBP12.08□□□□□ -0.48
NPHP4-204ENST00000460696 C1orf220Q5T0J3 134 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 MTDHQ86UE4 582 aaKnown RBP12.08□□□□□ -0.48
NPHP4-204ENST00000460696 ALLCQ8N6M5 410 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.08□□□□□ -0.48
NPHP4-204ENST00000460696 TFAP2BQ92481 460 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 CPXM1Q96SM3 734 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 MAFBQ9Y5Q3 323 aaPredicted RBP12.08□□□□□ -0.48
NPHP4-204ENST00000460696 PPP1R12AO14974 1030 aaPredicted RBP12.08□□□□□ -0.48
NPHP4-204ENST00000460696 CD4P01730 458 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 ACAT1P24752 427 aaKnown RBP12.08□□□□□ -0.48
NPHP4-204ENST00000460696 GRIK4Q16099 956 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 RASSF3Q86WH2 238 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 CCNYL1Q8N7R7 359 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 ATXN2LQ8WWM7 1075 aaKnown RBP12.08□□□□□ -0.48
NPHP4-204ENST00000460696 TMEM237Q96Q45 408 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.08□□□□□ -0.48
NPHP4-204ENST00000460696 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.08□□□□□ -0.48
NPHP4-204ENST00000460696 KIAA1257Q9ULG3 409 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms