RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 MTFR1Q15390 333 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 LRRC36Q1X8D7 754 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 PLEKHH3Q7Z736 793 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 ZC3H3Q8IXZ2 948 aaKnown RBP6.44□□□□□ -1.38
VPS13D-202ENST00000460333 DHX38Q92620 1227 aaKnown RBP6.44□□□□□ -1.38
VPS13D-202ENST00000460333 NLRP4Q96MN2 994 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 ACAP3Q96P50 834 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 NDEL1Q9GZM8 345 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 LACRTQ9GZZ8 138 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 SLC24A2Q9UI40 661 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 ZMYND8Q9ULU4 1186 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-202ENST00000460333 SLC45A1Q9Y2W3 748 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 ACTL7BQ9Y614 415 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 STK25O00506 426 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 XPOTO43592 962 aaKnown RBP6.44□□□□□ -1.38
VPS13D-202ENST00000460333 CALB1P05937 261 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 MYL3P08590 195 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 ATP6V1B1P15313 513 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 PTDSS1P48651 473 aaKnown RBP6.44□□□□□ -1.38
VPS13D-202ENST00000460333 SLC45A4Q5BKX6 768 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 BSPRYQ5W0U4 402 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 C1orf228Q6PIY5 440 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 LPCAT2Q7L5N7 544 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 PLPPR4Q7Z2D5 763 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 NANOGNBQ7Z5D8 188 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 RHPN2Q8IUC4 686 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 CCDC60Q8IWA6 550 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-202ENST00000460333 RNF149Q8NC42 400 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 KCTD6Q8NC69 237 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 DACT3Q96B18 629 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-202ENST00000460333 CBWD1Q9BRT8 395 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 FRMD8Q9BZ67 464 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-202ENST00000460333 TMEM134Q9H6X4 195 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 ANGPTL3Q9Y5C1 460 aa6.44□□□□□ -1.38
VPS13D-202ENST00000460333 A6NJR5 290 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 SMNDC1O75940 238 aaKnown RBP eCLIP6.43□□□□□ -1.381e-10■□□□□ 11.2
VPS13D-202ENST00000460333 PGK2P07205 417 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 KRT19P08727 400 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 ATICP31939 592 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 S100A5P33763 92 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 RPL5P46777 297 aaKnown RBP6.43□□□□□ -1.38
VPS13D-202ENST00000460333 ARHGDIAP52565 204 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 GEMIN4P57678 1058 aaKnown RBP6.43□□□□□ -1.38
VPS13D-202ENST00000460333 SPOPLQ6IQ16 392 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 RGMBQ6NW40 437 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 ZFP1Q6P2D0 407 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 GLYCTKQ8IVS8 523 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 TTC39CQ8N584 583 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 CELF4Q9BZC1 486 aaKnown RBP6.43□□□□□ -1.38
VPS13D-202ENST00000460333 TTYH3Q9C0H2 523 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 PORCNQ9H237 461 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 PRMT7Q9NVM4 692 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-202ENST00000460333 NEU2Q9Y3R4 380 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 A0A1B0GW55 424 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 RRN3P2A6NIE6 340 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 SAC3D1A6NKF1 404 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 ZBED1O96006 694 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 DUX4L2P0CJ85 424 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 DUX4L3P0CJ86 424 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 DUX4L4P0CJ87 422 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 DUX4L5P0CJ88 424 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 DUX4L6P0CJ89 424 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 DUX4L7P0CJ90 424 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 PRKCIP41743 596 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 GPC3P51654 580 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 CHN2P52757 468 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 C21orf59P57076 290 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 DUOXA2Q1HG44 320 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 ZNF568Q3ZCX4 644 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 CELF3Q5SZQ8 465 aaKnown RBP6.43□□□□□ -1.38
VPS13D-202ENST00000460333 TTC33Q6PID6 262 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-202ENST00000460333 WDR59Q6PJI9 974 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 NET1Q7Z628 596 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-202ENST00000460333 ANKRD23Q86SG2 305 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 RNF180Q86T96 592 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 RCOR2Q8IZ40 523 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 TMEM161BQ8NDZ6 487 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 REPS2Q8NFH8 660 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 C1orf54Q8WWF1 131 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 CKAP2Q8WWK9 683 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 BAP1Q92560 729 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 DUX4Q9UBX2 424 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 R3HDM2Q9Y2K5 976 aaKnown RBP6.43□□□□□ -1.38
VPS13D-202ENST00000460333 ARHGEF37A1IGU5 675 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 XPO1O14980 1071 aaKnown RBP6.43□□□□□ -1.38
VPS13D-202ENST00000460333 PFDN6O15212 129 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 HNRNPRO43390 633 aaKnown RBP6.43□□□□□ -1.38
VPS13D-202ENST00000460333 TPD52L2O43399 206 aaKnown RBP6.43□□□□□ -1.38
VPS13D-202ENST00000460333 FKTNO75072 461 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 RARBP10826 455 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 ITGA8P53708 1063 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 CYP24A1Q07973 514 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 TRADDQ15628 312 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 UGCGQ16739 394 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 ZPBP2Q6X784 338 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 ZNF677Q86XU0 584 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 PPM1NQ8N819 430 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 OR6J1Q8NGC5 347 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 E2F7Q96AV8 911 aa6.43□□□□□ -1.38
VPS13D-202ENST00000460333 GLT1D1Q96MS3 346 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms