RNA–Protein interactions for RNA: ENST00000457942.1

CHCHD3-204, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 4

Gene CHCHD3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-204ENST00000457942 CHFRQ96EP1 664 aa16.74■□□□□ 0.27
CHCHD3-204ENST00000457942 LOXL4Q96JB6 756 aa16.74■□□□□ 0.27
CHCHD3-204ENST00000457942 TNIP3Q96KP6 325 aa16.74■□□□□ 0.27
CHCHD3-204ENST00000457942 B3GNT5Q9BYG0 378 aa16.74■□□□□ 0.27
CHCHD3-204ENST00000457942 XYLT2Q9H1B5 865 aa16.74■□□□□ 0.27
CHCHD3-204ENST00000457942 INVSQ9Y283 1065 aa16.74■□□□□ 0.27
CHCHD3-204ENST00000457942 ANKRD11Q6UB99 2663 aaPredicted RBP16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 TRIM21P19474 475 aaKnown RBP16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 HOXA6P31267 233 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 PPP3CCP48454 512 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 GALK1P51570 392 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 NDUFA8P51970 172 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 CACNA2D1P54289 1103 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 TAF10Q12962 218 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 EML3Q32P44 896 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 KIAA1211LQ6NV74 962 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 SLC9A9Q8IVB4 645 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 FBXO32Q969P5 355 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 TTLL2Q9BWV7 592 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 KCTD10Q9H3F6 313 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 VPS45Q9NRW7 570 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 SMPD4Q9NXE4 827 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 HPSEQ9Y251 543 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 SPAG17Q6Q759 2223 aa16.73■□□□□ 0.27
CHCHD3-204ENST00000457942 ZNF840PA6NDX5 716 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 LEFTY2O00292 366 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 RTN3O95197 1032 aaPredicted RBP16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 C4BPAP04003 597 aaKnown RBP16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 PRR29P0C7W0 189 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 MBL2P11226 248 aaPredicted RBP16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 PFKLP17858 780 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 YWHAQP27348 245 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 DLG4P78352 724 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 PLK5Q496M5 336 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 SH3PXD2AQ5TCZ1 1133 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 FAM35AQ86V20 835 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 NUP93Q8N1F7 819 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 ADAM33Q9BZ11 813 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 IMPG2Q9BZV3 1241 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 SCAND2PQ9GZW5 306 aaPredicted RBP16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 VRTNQ9H8Y1 702 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 DMAP1Q9NPF5 467 aaPredicted RBP16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.72■□□□□ 0.271e-6■■■■□ 24.8
CHCHD3-204ENST00000457942 KRT82Q9NSB4 513 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 DMAC2Q9NW81 257 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 MAPK8IP1Q9UQF2 711 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 CPQQ9Y646 472 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 NBEAQ8NFP9 2946 aa16.72■□□□□ 0.27
CHCHD3-204ENST00000457942 MYO16Q9Y6X6 1858 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 SCAMP3O14828 347 aaKnown RBP16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 VNN1O95497 513 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 NR2F2P24468 414 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 GBP1P32455 592 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 ORC1Q13415 861 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 ACAP1Q15027 740 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 ELF2Q15723 593 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 SGSM1Q2NKQ1 1148 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 FBXO43Q4G163 708 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 ACOT1Q86TX2 421 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 PDZD8Q8NEN9 1154 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 RPLP0P6Q8NHW5 317 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 SMARCD1Q96GM5 515 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 CCDC34Q96HJ3 373 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 DUSP15Q9H1R2 295 aaPredicted RBP16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 LINC00597Q9H2U6 94 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 MMRN2Q9H8L6 949 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 FBRSL1Q9HCM7 1045 aaKnown RBP16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 TMEM30AQ9NV96 361 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 ZDHHC9Q9Y397 364 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 PCDHGA5Q9Y5G8 931 aa16.71■□□□□ 0.27
CHCHD3-204ENST00000457942 PKD1L2Q7Z442 2459 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 LNP1A1A4G5 178 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 AP1G2O75843 785 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 CAVIN2O95810 425 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 KRT13P13646 458 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 CCDC130P13994 396 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 TCF3P15923 654 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 CLDN10P78369 228 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 SLC7A9P82251 487 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 ZACNQ401N2 412 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 SPOPLQ6IQ16 392 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 KRBA2Q6ZNG9 492 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 FILIP1Q7Z7B0 1213 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 DDX42Q86XP3 938 aaKnown RBP eCLIP16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 TMC2Q8TDI7 906 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 ACDQ96AP0 544 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 KCNK16Q96T55 309 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 TPSD1Q9BZJ3 242 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 NACA2Q9H009 215 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 SDCBP2Q9H190 292 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 CFAP97Q9P2B7 532 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 KIAA1549LQ6ZVL6 1849 aa16.7■□□□□ 0.26
CHCHD3-204ENST00000457942 DSPP15924 2871 aaKnown RBP16.69■□□□□ 0.26
CHCHD3-204ENST00000457942 ITPR1Q14643 2758 aa16.69■□□□□ 0.26
CHCHD3-204ENST00000457942 PATE3B3GLJ2 98 aa16.69■□□□□ 0.26
CHCHD3-204ENST00000457942 SLC9A3R1O14745 358 aaPredicted RBP16.69■□□□□ 0.26
CHCHD3-204ENST00000457942 RHOBTB3O94955 611 aa16.69■□□□□ 0.26
CHCHD3-204ENST00000457942 OAS1P00973 400 aaKnown RBP16.69■□□□□ 0.26
CHCHD3-204ENST00000457942 HLA-DRAP01903 254 aa16.69■□□□□ 0.26
CHCHD3-204ENST00000457942 TRIM49P0CI25 452 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms