RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 CCDC137Q6PK04 289 aaKnown RBP14.93□□□□□ -0.02
USP39-207ENST00000450066 EIF1ADQ8N9N8 165 aaKnown RBP14.93□□□□□ -0.02
USP39-207ENST00000450066 FAM172AQ8WUF8 416 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 CENPIQ92674 756 aaPredicted RBP14.93□□□□□ -0.02
USP39-207ENST00000450066 TMEM175Q9BSA9 504 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 C11orf84Q9BUA3 381 aaPredicted RBP14.93□□□□□ -0.02
USP39-207ENST00000450066 DDX23Q9BUQ8 820 aaKnown RBP14.93□□□□□ -0.02
USP39-207ENST00000450066 PLEKHA4Q9H4M7 779 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 TMEM30AQ9NV96 361 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 TMLHEQ9NVH6 421 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 EFR3BQ9Y2G0 817 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 FAM187AA6NFU0 413 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 PRPSAP2O60256 369 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 TJP3O95049 919 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 COILP38432 576 aaPredicted RBP14.93□□□□□ -0.02
USP39-207ENST00000450066 SLC11A1P49279 550 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 CTCFP49711 727 aaPredicted RBP14.93□□□□□ -0.02
USP39-207ENST00000450066 CDR1P51861 262 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 YWHAZP63104 245 aaKnown RBP14.93□□□□□ -0.02
USP39-207ENST00000450066 ATP11AP98196 1134 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 TTC27Q6P3X3 843 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 SEC14L1Q92503 715 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 ACSF2Q96CM8 615 aaPredicted RBP14.93□□□□□ -0.02
USP39-207ENST00000450066 VWCEQ96DN2 955 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 TMEM209Q96SK2 561 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 CNGB3Q9NQW8 809 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.93□□□□□ -0.02
USP39-207ENST00000450066 FAN1Q9Y2M0 1017 aa14.93□□□□□ -0.02
USP39-207ENST00000450066 UTP11Q9Y3A2 253 aaKnown RBP14.93□□□□□ -0.02
USP39-207ENST00000450066 hCG_1818297A0A087WSY0 165 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 ESYT3A0FGR9 886 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 HHLA1C9JL84 531 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 BDNFP23560 247 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 KDELR1P24390 212 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 MATKP42679 507 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 NDUFV1P49821 464 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 CUL1Q13616 776 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 TAZQ16635 292 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 CDO1Q16878 200 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 BOLA3Q53S33 107 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.92□□□□□ -0.02
USP39-207ENST00000450066 C4orf50Q6ZRC1 276 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 CYP4V2Q6ZWL3 525 aaPredicted RBP14.92□□□□□ -0.02
USP39-207ENST00000450066 NECAB2Q7Z6G3 386 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 LRRC43Q8N309 656 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 AENQ8WTP8 325 aaKnown RBP14.92□□□□□ -0.02
USP39-207ENST00000450066 CASKIN2Q8WXE0 1202 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.92□□□□□ -0.02
USP39-207ENST00000450066 SLCO2A1Q92959 643 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 PEBP4Q96S96 227 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 RAB17Q9H0T7 212 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 PNPLA8Q9NP80 782 aa14.92□□□□□ -0.02
USP39-207ENST00000450066 NGRNQ9NPE2 291 aaKnown RBP14.92□□□□□ -0.02
USP39-207ENST00000450066 DMAP1Q9NPF5 467 aaPredicted RBP14.92□□□□□ -0.02
USP39-207ENST00000450066 MICAL3Q7RTP6 2002 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 DAB1O75553 588 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 TIMP1P01033 207 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 KRT10P13645 584 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 PTGIRP43119 386 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 CARSP49589 748 aaKnown RBP14.91□□□□□ -0.02
USP39-207ENST00000450066 CCNG2Q16589 344 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 VARS2Q5ST30 1063 aaKnown RBP14.91□□□□□ -0.02
USP39-207ENST00000450066 JAMLQ86YT9 394 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 CCDC105Q8IYK2 499 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 DCP1BQ8IZD4 617 aaKnown RBP14.91□□□□□ -0.02
USP39-207ENST00000450066 KCTD6Q8NC69 237 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 TEKT4Q8WW24 435 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 C1orf54Q8WWF1 131 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 IFT81Q8WYA0 676 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 TBCBQ99426 244 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 RHOBTB2Q9BYZ6 727 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 DCLK3Q9C098 648 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 ZCWPW1Q9H0M4 648 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 MARCH5Q9NX47 278 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 RASAL2Q9UJF2 1139 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 SF3B1O75533 1304 aaKnown RBP eCLIP14.91□□□□□ -0.023e-9■■■■■ 206.8
USP39-207ENST00000450066 GALTP07902 379 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 FGFR3P22607 806 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 EPHB4P54760 987 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 HDAC4P56524 1084 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 ADCY2Q08462 1091 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 ELAVL2Q12926 359 aaKnown RBP14.91□□□□□ -0.02
USP39-207ENST00000450066 MRPL58Q14197 206 aaKnown RBP14.91□□□□□ -0.02
USP39-207ENST00000450066 SLC25A52Q3SY17 297 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 RAB6CQ53S08 254 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 FAM171A1Q5VUB5 890 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 GPRIN1Q7Z2K8 1008 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 SPATA2LQ8IUW3 424 aaPredicted RBP14.91□□□□□ -0.02
USP39-207ENST00000450066 NDRG1Q92597 394 aaKnown RBP14.91□□□□□ -0.02
USP39-207ENST00000450066 FAM149B1Q96BN6 582 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 SLC2A13Q96QE2 648 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 ERP44Q9BS26 406 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 TMEM106CQ9BVX2 250 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 FUT8Q9BYC5 575 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 GPR62Q9BZJ7 368 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 ULBP1Q9BZM6 244 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 RAB6CQ9H0N0 254 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 CHST7Q9NS84 486 aa14.91□□□□□ -0.02
USP39-207ENST00000450066 FEZ2Q9UHY8 353 aaPredicted RBP14.91□□□□□ -0.02
USP39-207ENST00000450066 R3HDM2Q9Y2K5 976 aaKnown RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms