RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TADA2BQ86TJ2 420 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 CRYBG2Q8N1P7 616 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 PDCD7Q8N8D1 485 aaKnown RBP7.51□□□□□ -1.21
VPS41-208ENST00000448833 RPLP0P6Q8NHW5 317 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 ZNF516Q92618 1163 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 CHFRQ96EP1 664 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 PAGE5Q96GU1 130 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 FAXDC2Q96IV6 333 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 SPATA32Q96LK8 384 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 SLC22A12Q96S37 553 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 PNKPQ96T60 521 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 MRPL45Q9BRJ2 306 aaKnown RBP7.51□□□□□ -1.21
VPS41-208ENST00000448833 GTPBP4Q9BZE4 634 aaKnown RBP7.51□□□□□ -1.21
VPS41-208ENST00000448833 NACA2Q9H009 215 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 XYLT2Q9H1B5 865 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 BLZF1Q9H2G9 400 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 FAM124BQ9H5Z6 455 aaPredicted RBP7.51□□□□□ -1.21
VPS41-208ENST00000448833 DMAP1Q9NPF5 467 aaPredicted RBP7.51□□□□□ -1.21
VPS41-208ENST00000448833 VPS45Q9NRW7 570 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 DMAC2Q9NW81 257 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 WNT6Q9Y6F9 365 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 DNAH14Q0VDD8 3507 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 A0A0A0MRY4 1105 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 STX10O60499 249 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 EPN2O95208 641 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 C4BPAP04003 597 aaKnown RBP7.5□□□□□ -1.21
VPS41-208ENST00000448833 NR3C1P04150 777 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 MBL2P11226 248 aaPredicted RBP7.5□□□□□ -1.21
VPS41-208ENST00000448833 KRT13P13646 458 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 GRIA2P42262 883 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 SYKP43405 635 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 DNM1Q05193 864 aaKnown RBP7.5□□□□□ -1.21
VPS41-208ENST00000448833 GAD2Q05329 585 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 DMWDQ09019 674 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 STK4Q13043 487 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 NFIL3Q16649 462 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 FOXD4L6Q3SYB3 417 aaPredicted RBP7.5□□□□□ -1.21
VPS41-208ENST00000448833 ZACNQ401N2 412 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 KMT5BQ4FZB7 885 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 AASDHQ4L235 1098 aaPredicted RBP7.5□□□□□ -1.21
VPS41-208ENST00000448833 WDR44Q5JSH3 913 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 SPDYCQ5MJ68 293 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 EOGTQ5NDL2 527 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 FOXD4L5Q5VV16 416 aaPredicted RBP7.5□□□□□ -1.21
VPS41-208ENST00000448833 FOXD4L3Q6VB84 417 aaPredicted RBP7.5□□□□□ -1.21
VPS41-208ENST00000448833 INTS8Q75QN2 995 aaKnown RBP7.5□□□□□ -1.21
VPS41-208ENST00000448833 FILIP1Q7Z7B0 1213 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 TSTD1Q8NFU3 115 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 FOXD4L4Q8WXT5 416 aaPredicted RBP7.5□□□□□ -1.21
VPS41-208ENST00000448833 FBXO32Q969P5 355 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 B3GNT5Q9BYG0 378 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 RNF38Q9H0F5 515 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 ARRDC1-AS1Q9H2J1 176 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 LINC00597Q9H2U6 94 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 CYP3A43Q9HB55 503 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 FBRSL1Q9HCM7 1045 aaKnown RBP7.5□□□□□ -1.21
VPS41-208ENST00000448833 POLMQ9NP87 494 aaPredicted RBP7.5□□□□□ -1.21
VPS41-208ENST00000448833 PARD6AQ9NPB6 346 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.5□□□□□ -1.21
VPS41-208ENST00000448833 TLR8Q9NR97 1041 aaKnown RBP7.5□□□□□ -1.21
VPS41-208ENST00000448833 IL37Q9NZH6 218 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 SERTAD1Q9UHV2 236 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 MMP17Q9ULZ9 603 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 TRAF3IP3Q9Y228 551 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 SH3BP1Q9Y3L3 701 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 CPQQ9Y646 472 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.5□□□□□ -1.21
VPS41-208ENST00000448833 PLXND1Q9Y4D7 1925 aa7.5□□□□□ -1.21
VPS41-208ENST00000448833 MED19A0JLT2 244 aaPredicted RBP7.49□□□□□ -1.21
VPS41-208ENST00000448833 FAM92AA1XBS5 289 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 LRRIQ3A6PVS8 624 aaPredicted RBP7.49□□□□□ -1.21
VPS41-208ENST00000448833 K7EQS6 105 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 TNFRSF10BO14763 440 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 HCRTO43612 131 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 ACTN4O43707 911 aaKnown RBP7.49□□□□□ -1.21
VPS41-208ENST00000448833 KLRC4O43908 158 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 AP1G2O75843 785 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 ASS1P00966 412 aaKnown RBP7.49□□□□□ -1.21
VPS41-208ENST00000448833 ADH5P11766 374 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 PRKCSHP14314 528 aaPredicted RBP7.49□□□□□ -1.21
VPS41-208ENST00000448833 PFKFB1P16118 471 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 GBP1P32455 592 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 GTF2H1P32780 548 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 PSMC2P35998 433 aaKnown RBP7.49□□□□□ -1.21
VPS41-208ENST00000448833 ATP5C1P36542 298 aaKnown RBP7.49□□□□□ -1.21
VPS41-208ENST00000448833 VAMP7P51809 220 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 SLC8A3P57103 927 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 USP46P62068 366 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 SRSF5Q13243 272 aaKnown RBP7.49□□□□□ -1.21
VPS41-208ENST00000448833 DHCR24Q15392 516 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 PLK5Q496M5 336 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 C2orf27AQ580R0 203 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 CEP135Q66GS9 1140 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 SCARA3Q6AZY7 606 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 SDE2Q6IQ49 451 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 SV2AQ7L0J3 742 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 FAM35AQ86V20 835 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 KBTBD6Q86V97 674 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 ZNF276Q8N554 614 aa7.49□□□□□ -1.21
VPS41-208ENST00000448833 USP33Q8TEY7 942 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms