RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CCDC88AQ3V6T2 1871 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 PJA2O43164 708 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 ANXA9O76027 345 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 NFIL3Q16649 462 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 WDR75Q8IWA0 830 aaKnown RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 CCNYL1Q8N7R7 359 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 ADAM32Q8TC27 787 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 THOC1Q96FV9 657 aaKnown RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 EMILIN2Q9BXX0 1053 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 L2HGDHQ9H9P8 463 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 XPNPEP1Q9NQW7 623 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 SF3B1O75533 1304 aaKnown RBP eCLIP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 RTN3O95197 1032 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 CYP2F1P24903 491 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 FDFT1P37268 417 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 GRIK3Q13003 919 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 LAMB3Q13751 1172 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 LONRF1Q17RB8 773 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 TBC1D1Q86TI0 1168 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 LRRC52Q8N7C0 313 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 B3GALNT2Q8NCR0 500 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 PTPRN2Q92932 1015 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 CDK5RAP1Q96SZ6 601 aaKnown RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 ELAC2Q9BQ52 826 aaKnown RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 CACYBPQ9HB71 228 aaKnown RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 WRAP73Q9P2S5 460 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 FAM8A1Q9UBU6 413 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 PADI3Q9ULW8 664 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 NR2E3Q9Y5X4 410 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 B4GALT4O60513 344 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 CDH16O75309 829 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 POLBP06746 335 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 NCF2P19878 526 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 NUMBP49757 651 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 PRMT2P55345 433 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 TBX4P57082 545 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 UNC45BQ8IWX7 931 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 CARNMT1Q8N4J0 409 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 DDI1Q8WTU0 396 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 TBCBQ99426 244 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 TMEM121Q9BTD3 319 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 HACD3Q9P035 362 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 BAIAP2L1Q9UHR4 511 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 ADAM21Q9UKJ8 722 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 SLC30A1Q9Y6M5 507 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 CCDC195A0A1B0GUA6 201 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 GOLGA8RI6L899 631 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 LTFP02788 710 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 SELPP16109 830 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 NPR3P17342 541 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 SP2Q02086 613 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 ARHGAP1Q07960 439 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 FASTKD1Q53R41 847 aaKnown RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 DENND5BQ6ZUT9 1274 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 RASAL3Q86YV0 1011 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 ACTL9Q8TC94 416 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 DCUN1D1Q96GG9 259 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 OLA1Q9NTK5 396 aaKnown RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 CDH9Q9ULB4 789 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 CAPN7Q9Y6W3 813 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 CHD4Q14839 1912 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 TRIM66O15016 1216 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 TSPAN1O60635 241 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 DNAJC6O75061 913 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 ARIH2O95376 493 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 ARHGEF7Q14155 803 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 LRRC14Q15048 493 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 CCNG2Q16589 344 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 UGP2Q16851 508 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 TIGD7Q6NT04 549 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 DCLRE1AQ6PJP8 1040 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 NECAB2Q7Z6G3 386 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 C18orf25Q96B23 403 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 TRIM55Q9BYV6 548 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 TRABDQ9H4I3 376 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 PDZD7Q9H5P4 517 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 C20orf96Q9NUD7 363 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 SENP1Q9P0U3 644 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 DERAQ9Y315 318 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 A0A0G2JND7 137 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 TTLL13PA6NNM8 815 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 SPAG6O75602 509 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 PLD1Q13393 1074 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 RBBP5Q15291 538 aaKnown RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 ZBTB41Q5SVQ8 909 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 LINC00523Q86TU6 105 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 NT5DC3Q86UY8 548 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 NUDCD3Q8IVD9 361 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 NPLOC4Q8TAT6 608 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 LNX1Q8TBB1 728 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 SEMA4DQ92854 862 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 SERPINB11Q96P15 392 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 EGFL8Q99944 293 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 FRMD8Q9BZ67 464 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 SUDS3Q9H7L9 328 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 POPDC2Q9HBU9 364 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 XAB2Q9HCS7 855 aaKnown RBP7.68□□□□□ -1.18
SYNE1-213ENST00000448038 SMPD4Q9NXE4 827 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 GTSE1Q9NYZ3 720 aa7.68□□□□□ -1.18
SYNE1-213ENST00000448038 CARNS1A5YM72 827 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms