RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 ACP6Q9NPH0 428 aa19.68■□□□□ 0.74
SHH-202ENST00000430104 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.68■□□□□ 0.74
SHH-202ENST00000430104 CNTN6Q9UQ52 1028 aa19.68■□□□□ 0.74
SHH-202ENST00000430104 KIF26AQ9ULI4 1882 aaPredicted RBP19.68■□□□□ 0.74
SHH-202ENST00000430104 MUC3AQ02505 3323 aa19.68■□□□□ 0.74
SHH-202ENST00000430104 THAP12O43422 761 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 PNMA6AP0CW24 399 aaPredicted RBP19.67■□□□□ 0.74
SHH-202ENST00000430104 MBL2P11226 248 aaPredicted RBP19.67■□□□□ 0.74
SHH-202ENST00000430104 PGFP49763 221 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 PDE6CP51160 858 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 KIF11P52732 1056 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 PFKPQ01813 784 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 NFKBIBQ15653 356 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 CNGA2Q16280 664 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 SLC44A4Q53GD3 710 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 KLHDC7AQ5VTJ3 777 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 DPY19L2P1Q6NXN4 242 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 LCLAT1Q6UWP7 414 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 FLCNQ8NFG4 579 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 TTC8Q8TAM2 541 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 IRF7Q92985 503 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 CCSER2Q9H7U1 834 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 KIF9Q9HAQ2 790 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 ARHGEF3Q9NR81 526 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 TLR8Q9NR97 1041 aaKnown RBP19.67■□□□□ 0.74
SHH-202ENST00000430104 HEBP1Q9NRV9 189 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 THG1LQ9NWX6 298 aaKnown RBP19.67■□□□□ 0.74
SHH-202ENST00000430104 SMPD4Q9NXE4 827 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 OBP2AQ9NY56 170 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 SCML2Q9UQR0 700 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 FHOD1Q9Y613 1164 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 COL4A3Q01955 1670 aa19.67■□□□□ 0.74
SHH-202ENST00000430104 FAM92AA1XBS5 289 aa19.66■□□□□ 0.74
SHH-202ENST00000430104 XPO1O14980 1071 aaKnown RBP19.66■□□□□ 0.74
SHH-202ENST00000430104 GNA15P30679 374 aa19.66■□□□□ 0.74
SHH-202ENST00000430104 RGS7P49802 495 aa19.66■□□□□ 0.74
SHH-202ENST00000430104 TKTL1P51854 596 aa19.66■□□□□ 0.74
SHH-202ENST00000430104 UBXN1Q04323 297 aa19.66■□□□□ 0.74
SHH-202ENST00000430104 STILQ15468 1287 aa19.66■□□□□ 0.74
SHH-202ENST00000430104 HECTD3Q5T447 861 aa19.66■□□□□ 0.74
SHH-202ENST00000430104 RIN3Q8TB24 985 aa19.66■□□□□ 0.74
SHH-202ENST00000430104 CSGALNACT1Q8TDX6 532 aa19.66■□□□□ 0.74
SHH-202ENST00000430104 SH3RF2Q8TEC5 729 aa19.66■□□□□ 0.74
SHH-202ENST00000430104 SHC3Q92529 594 aa19.66■□□□□ 0.74
SHH-202ENST00000430104 SECISBP2LQ93073 1101 aaKnown RBP19.66■□□□□ 0.74
SHH-202ENST00000430104 UBXN6Q9BZV1 441 aa19.66■□□□□ 0.74
SHH-202ENST00000430104 NACA2Q9H009 215 aa19.66■□□□□ 0.74
SHH-202ENST00000430104 LRRC4Q9HBW1 653 aa19.66■□□□□ 0.74
SHH-202ENST00000430104 A0A1W2PQH9 124 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 FOXN3O00409 490 aaPredicted RBP19.65■□□□□ 0.74
SHH-202ENST00000430104 PIK3R2O00459 728 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 CHADO15335 359 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 COCHO43405 550 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 MED7O43513 233 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 OAS1P00973 400 aaKnown RBP19.65■□□□□ 0.74
SHH-202ENST00000430104 ZDHHC11BP0C7U3 371 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 SETSIPP0DME0 302 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 LCP1P13796 627 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 FCHO2Q0JRZ9 810 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 ZNF268Q14587 947 aaPredicted RBP19.65■□□□□ 0.74
SHH-202ENST00000430104 DRAP1Q14919 205 aaPredicted RBP19.65■□□□□ 0.74
SHH-202ENST00000430104 IQCB1Q15051 598 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 MLF2Q15773 248 aaPredicted RBP19.65■□□□□ 0.74
SHH-202ENST00000430104 ARHGAP29Q52LW3 1261 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 CC2D1AQ6P1N0 951 aaPredicted RBP19.65■□□□□ 0.74
SHH-202ENST00000430104 BMP8AQ7Z5Y6 402 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 SUGP1Q8IWZ8 645 aaKnown RBP19.65■□□□□ 0.74
SHH-202ENST00000430104 FBXL6Q8N531 539 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 ZNF606Q8WXB4 792 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 NDRG1Q92597 394 aaKnown RBP19.65■□□□□ 0.74
SHH-202ENST00000430104 NMUR1Q9HB89 426 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 CBX8Q9HC52 389 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 GKN1Q9NS71 199 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 NAGPAQ9UK23 515 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 CPQQ9Y646 472 aa19.65■□□□□ 0.74
SHH-202ENST00000430104 LGALS16A8MUM7 142 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 UCHL3P15374 230 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 PFKLP17858 780 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 ADIGQ0VDE8 80 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 MTF1Q14872 753 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 SYCP1Q15431 976 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 PKDCCQ504Y2 493 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 SNX30Q5VWJ9 437 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 TRIM68Q6AZZ1 485 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 DENND1BQ6P3S1 775 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 TPRG1Q6ZUI0 275 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 LUZP1Q86V48 1076 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 DNASE1L2Q92874 299 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 ULBP1Q9BZM6 244 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 TBC1D17Q9HA65 648 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 FAM207AQ9NSI2 230 aaPredicted RBP19.64■□□□□ 0.73
SHH-202ENST00000430104 OSER1Q9NX31 292 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 NUDT5Q9UKK9 219 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 ARHGAP26Q9UNA1 814 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 USP3Q9Y6I4 520 aa19.64■□□□□ 0.73
SHH-202ENST00000430104 COL4A2P08572 1712 aa19.63■□□□□ 0.73
SHH-202ENST00000430104 LEFTY2O00292 366 aa19.63■□□□□ 0.73
SHH-202ENST00000430104 TBX18O95935 607 aa19.63■□□□□ 0.73
SHH-202ENST00000430104 RARGP13631 454 aa19.63■□□□□ 0.73
SHH-202ENST00000430104 CD72P21854 359 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms