RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 FAM172AQ8WUF8 416 aa13.46□□□□□ -0.26
PTCH1-207ENST00000429896 ZFP42Q96MM3 310 aa13.46□□□□□ -0.26
PTCH1-207ENST00000429896 OSBPL9Q96SU4 736 aa13.46□□□□□ -0.26
PTCH1-207ENST00000429896 RRN3Q9NYV6 651 aa13.46□□□□□ -0.26
PTCH1-207ENST00000429896 LIG3P49916 1009 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 PHEXP78562 749 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 SPIRE1Q08AE8 756 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 ECHDC2Q86YB7 292 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 RMDN1Q96DB5 314 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 MAGEB5Q9BZ81 275 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 B3GALNT2Q8NCR0 500 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 ARNTL2Q8WYA1 636 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 CORO1BQ9BR76 489 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 FAM8A1Q9UBU6 413 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 CHORDC1Q9UHD1 332 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-207ENST00000429896 ADAM28Q9UKQ2 775 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 ZNF831Q5JPB2 1677 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 COL24A1Q17RW2 1714 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 A0A1B0GUA9 196 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 MYH1P12882 1939 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 COMTP21964 271 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 NFIL3Q16649 462 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 CENPUQ71F23 418 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 C11orf84Q9BUA3 381 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-207ENST00000429896 GOLGA2P5Q9HBQ8 144 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 ITM2BQ9Y287 266 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 EPHB2P29323 1055 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 NCAPHQ15003 741 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 SMTNL2Q2TAL5 461 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 SLFN11Q7Z7L1 901 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 EDEM1Q92611 657 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 FLRT1Q9NZU1 646 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 USP27XA6NNY8 438 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 CSH1P0DML2 217 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 CSH2P0DML3 217 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 TBX4P57082 545 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 SMARCB1Q12824 385 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 C2CD6Q53TS8 623 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 TAF1P21675 1872 aa13.45□□□□□ -0.26
PTCH1-207ENST00000429896 MGEA5O60502 916 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 GPC4O75487 556 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 ASPHQ12797 758 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 PDK1Q15118 436 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 FOXR2Q6PJQ5 311 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 CSGALNACT1Q8TDX6 532 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 PPWD1Q96BP3 646 aaKnown RBP13.44□□□□□ -0.26
PTCH1-207ENST00000429896 SERPINB11Q96P15 392 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 C16orf70Q9BSU1 422 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.44□□□□□ -0.26
PTCH1-207ENST00000429896 SLC25A13Q9UJS0 675 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 CHRNA3P32297 505 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 FBXW4P57775 412 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 TMEM63BQ5T3F8 832 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 INSL6Q9Y581 213 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 C1QBPQ07021 282 aaKnown RBP13.44□□□□□ -0.26
PTCH1-207ENST00000429896 USP33Q8TEY7 942 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 RSPH1Q8WYR4 309 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 FUCA2Q9BTY2 467 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 PLEKP08567 350 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-207ENST00000429896 ARL4CP56559 192 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 SLC7A5Q01650 507 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 CCDC15Q0P6D6 951 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 ZNF268Q14587 947 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-207ENST00000429896 ZACNQ401N2 412 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 MRPS23Q9Y3D9 190 aaKnown RBP13.44□□□□□ -0.26
PTCH1-207ENST00000429896 MYADML2A6NDP7 307 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 CFLARO15519 480 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 OR1D2P34982 312 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 PEX19P40855 299 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 TMEM259Q4ZIN3 620 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 FAM133BQ5BKY9 247 aaKnown RBP13.44□□□□□ -0.26
PTCH1-207ENST00000429896 DENND5BQ6ZUT9 1274 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 C1orf54Q8WWF1 131 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 SDCCAG3Q96C92 435 aa13.44□□□□□ -0.26
PTCH1-207ENST00000429896 TRAV19A0A0A6YYK7 116 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 CLCN6P51797 869 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 YWHAZP63104 245 aaKnown RBP13.43□□□□□ -0.26
PTCH1-207ENST00000429896 APOL5Q9BWW9 433 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 FGFBP2Q9BYJ0 223 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 FBXL21Q9UKT6 434 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 SLC27A5Q9Y2P5 690 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 CACNA1SQ13698 1873 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 KCNN4O15554 427 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 NPR3P17342 541 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 CCR1P32246 355 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 DEPDC1BQ8WUY9 529 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 CNPY3Q9BT09 278 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 SMPD4Q9NXE4 827 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 KRT14P02533 472 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 USP17L7P0C7H9 530 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 NCF2P19878 526 aaPredicted RBP13.43□□□□□ -0.26
PTCH1-207ENST00000429896 FUT10Q6P4F1 479 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 FBXO38Q6PIJ6 1188 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 RAD9BQ6WBX8 426 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 ZNF571Q7Z3V5 609 aaPredicted RBP13.43□□□□□ -0.26
PTCH1-207ENST00000429896 RAB44Q7Z6P3 723 aaPredicted RBP13.43□□□□□ -0.26
PTCH1-207ENST00000429896 MED4Q9NPJ6 270 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 LAMB2P55268 1798 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 PSMD3O43242 534 aa13.43□□□□□ -0.26
PTCH1-207ENST00000429896 RGS20O76081 388 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms