RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 DNAJC3Q13217 504 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 TSGA10IPQ3SY00 556 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 ICE2Q659A1 982 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 HERC6Q8IVU3 1022 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 MED8Q96G25 268 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 ILKAPQ9H0C8 392 aaPredicted RBP15.91■□□□□ 0.14
PTPRF-206ENST00000429895 RMND5AQ9H871 391 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 SNX8Q9Y5X2 465 aa15.91■□□□□ 0.14
PTPRF-206ENST00000429895 MGAT4DA6NG13 374 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 TBKBP1A7MCY6 615 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 CYP11B2P19099 503 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 RRM2P31350 389 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 FBXO36Q8NEA4 188 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 ARP10275 920 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 TIGD7Q6NT04 549 aaPredicted RBP15.9■□□□□ 0.14
PTPRF-206ENST00000429895 XRRA1Q6P2D8 792 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 PLA2G4CQ9UP65 541 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 PLA2G6O60733 806 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 THP07101 528 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 TARSP26639 723 aaKnown RBP15.9■□□□□ 0.14
PTPRF-206ENST00000429895 ALDH9A1P49189 494 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 FBXO33Q7Z6M2 555 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 IGFLR1Q9H665 355 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 LNPEPQ9UIQ6 1025 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 GOLGA8TH3BQL2 631 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 PLEKP08567 350 aaPredicted RBP15.9■□□□□ 0.14
PTPRF-206ENST00000429895 ITGALP20701 1170 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 KPNA1P52294 538 aaPredicted RBP15.9■□□□□ 0.14
PTPRF-206ENST00000429895 CCZ1BP86790 482 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 CCZ1P86791 482 aaPredicted RBP15.9■□□□□ 0.14
PTPRF-206ENST00000429895 SHROOM1Q2M3G4 852 aaPredicted RBP15.9■□□□□ 0.14
PTPRF-206ENST00000429895 FAM131BQ86XD5 332 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 CERKQ8TCT0 537 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 RGS5O15539 181 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 ZNF682O95780 498 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 ANXA11P50995 505 aaKnown RBP15.9■□□□□ 0.14
PTPRF-206ENST00000429895 CSTF3Q12996 717 aaKnown RBP15.9■□□□□ 0.14
PTPRF-206ENST00000429895 DEPDC7Q96QD5 511 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 PPCSQ9HAB8 311 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 SPATA31A1Q5TZJ5 1347 aa15.9■□□□□ 0.14
PTPRF-206ENST00000429895 EIF3HO15372 352 aaKnown RBP eCLIP15.89■□□□□ 0.143e-7■■□□□ 11.7
PTPRF-206ENST00000429895 PQBP1O60828 265 aaKnown RBP15.89■□□□□ 0.14
PTPRF-206ENST00000429895 GYPCP04921 128 aa15.89■□□□□ 0.14
PTPRF-206ENST00000429895 SUPT20HL2P0C7V6 817 aa15.89■□□□□ 0.14
PTPRF-206ENST00000429895 CAP2P40123 477 aa15.89■□□□□ 0.14
PTPRF-206ENST00000429895 COPAP53621 1224 aa15.89■□□□□ 0.14
PTPRF-206ENST00000429895 TTC33Q6PID6 262 aaPredicted RBP15.89■□□□□ 0.14
PTPRF-206ENST00000429895 PTAR1Q7Z6K3 402 aaPredicted RBP15.89■□□□□ 0.14
PTPRF-206ENST00000429895 AGBL3Q8NEM8 1001 aa15.89■□□□□ 0.14
PTPRF-206ENST00000429895 SPIRE2Q8WWL2 714 aa15.89■□□□□ 0.14
PTPRF-206ENST00000429895 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.89■□□□□ 0.148e-7■■■■■ 32.1
PTPRF-206ENST00000429895 PRMT6Q96LA8 375 aaPredicted RBP15.89■□□□□ 0.14
PTPRF-206ENST00000429895 MKNK1Q9BUB5 465 aa15.89■□□□□ 0.14
PTPRF-206ENST00000429895 MED24O75448 989 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 PARNO95453 639 aaKnown RBP15.89■□□□□ 0.13
PTPRF-206ENST00000429895 VDRP11473 427 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 ZNF23P17027 643 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 PSMA4P25789 261 aaKnown RBP15.89■□□□□ 0.13
PTPRF-206ENST00000429895 SERPINB8P50452 374 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 ZNF786Q8N393 782 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 MTERF3Q96E29 417 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 KCNF1Q9H3M0 494 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 RGL2O15211 777 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 ATP6V1B1P15313 513 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 RPL10AP62906 217 aaKnown RBP15.89■□□□□ 0.13
PTPRF-206ENST00000429895 DAB2IPQ5VWQ8 1189 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 OPTNQ96CV9 577 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 OSMRQ99650 979 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 ROPN1BQ9BZX4 212 aaPredicted RBP15.89■□□□□ 0.13
PTPRF-206ENST00000429895 ROPN1Q9HAT0 212 aaPredicted RBP15.89■□□□□ 0.13
PTPRF-206ENST00000429895 PAPOLBQ9NRJ5 636 aaKnown RBP15.89■□□□□ 0.13
PTPRF-206ENST00000429895 TDRKHQ9Y2W6 561 aaKnown RBP15.89■□□□□ 0.13
PTPRF-206ENST00000429895 PCDHB12Q9Y5F1 795 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 A0A1W2PQJ5 194 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 NR5A2O00482 541 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 HOXA2O43364 376 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 SCNN1BP51168 640 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 ARRDC4Q8NCT1 418 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 ZNF512BQ96KM6 892 aaPredicted RBP15.89■□□□□ 0.13
PTPRF-206ENST00000429895 CYP39A1Q9NYL5 469 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 TRPC4Q9UBN4 977 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 HPS5Q9UPZ3 1129 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 E9PBE3 544 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 KRT20P35900 424 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 SOX10P56693 466 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 MTSS1LQ765P7 747 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 SETD3Q86TU7 594 aaPredicted RBP15.89■□□□□ 0.13
PTPRF-206ENST00000429895 RDM1Q8NG50 284 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 TPCN2Q8NHX9 752 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 UBXN6Q9BZV1 441 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 PDGFCQ9NRA1 345 aa15.89■□□□□ 0.13
PTPRF-206ENST00000429895 FOXN3O00409 490 aaPredicted RBP15.88■□□□□ 0.13
PTPRF-206ENST00000429895 PSTPIP1O43586 416 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 ABCB1P08183 1280 aaPredicted RBP15.88■□□□□ 0.13
PTPRF-206ENST00000429895 MUTP22033 750 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 EPHX2P34913 555 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 TC2NQ8N9U0 490 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 TMCC3Q9ULS5 477 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 SMAPO00193 183 aa15.88■□□□□ 0.13
PTPRF-206ENST00000429895 FNTAP49354 379 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms