RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 AP1B1Q10567 949 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 RASA2Q15283 850 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 ERMARDQ5T6L9 678 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 NEK5Q6P3R8 708 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 CLK4Q9HAZ1 481 aaKnown RBP10.2□□□□□ -0.78
USP54-205ENST00000424265 RBAKQ9NYW8 714 aaPredicted RBP10.2□□□□□ -0.78
USP54-205ENST00000424265 GPR25O00155 361 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 CD19P15391 556 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 TAL1P17542 331 aaPredicted RBP10.2□□□□□ -0.78
USP54-205ENST00000424265 IST1P53990 364 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 SLC12A3P55017 1021 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 BTKQ06187 659 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 PKN2Q16513 984 aaKnown RBP10.2□□□□□ -0.78
USP54-205ENST00000424265 ZNF667Q5HYK9 610 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 TREML1Q86YW5 311 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 KSR1Q8IVT5 923 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 SAMD14Q8IZD0 417 aaPredicted RBP10.2□□□□□ -0.78
USP54-205ENST00000424265 NUP93Q8N1F7 819 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 TTC8Q8TAM2 541 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 EME1Q96AY2 570 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 KLHL4Q9C0H6 718 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 FBXL5Q9UKA1 691 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 ANGPTL3Q9Y5C1 460 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 SPAG7O75391 227 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 MAFO75444 373 aaPredicted RBP10.2□□□□□ -0.78
USP54-205ENST00000424265 CLPTM1O96005 669 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 TARSP26639 723 aaKnown RBP10.2□□□□□ -0.78
USP54-205ENST00000424265 PTGS2P35354 604 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 ADAM17P78536 824 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 TRIM16LQ309B1 348 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 NFRKBQ6P4R8 1299 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 THNSL1Q8IYQ7 743 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 CAPSLQ8WWF8 208 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 IRGQQ8WZA9 623 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 IFIH1Q9BYX4 1025 aaKnown RBP10.2□□□□□ -0.78
USP54-205ENST00000424265 CEP72Q9P209 647 aa10.2□□□□□ -0.78
USP54-205ENST00000424265 TMEM114B3SHH9 223 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 EML1O00423 815 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 FOXN1O15353 648 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 TEX33O43247 280 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 TOM1L1O75674 476 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 STAG3L1P0CL83 205 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 PRKACAP17612 351 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 PCSK7Q16549 785 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 PARP6Q2NL67 630 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 ZNF792Q3KQV3 632 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 FAM117BQ6P1L5 589 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 ZNF720Q7Z2F6 126 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 IQCKQ8N0W5 287 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 GLMNQ92990 594 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 FAM213AQ9BRX8 229 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 NUP85Q9BW27 656 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 BLOC1S4Q9NUP1 217 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 FGFR1OP2Q9NVK5 253 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 DDX56Q9NY93 547 aaKnown RBP10.19□□□□□ -0.78
USP54-205ENST00000424265 PIN4Q9Y237 131 aaKnown RBP10.19□□□□□ -0.78
USP54-205ENST00000424265 BAZ2BQ9UIF8 2168 aaKnown RBP10.19□□□□□ -0.78
USP54-205ENST00000424265 MOXD2PA6NHM9 499 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 FYNP06241 537 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 FAM153BP0C7A2 387 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 NPTX2P47972 431 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 PTPN11Q06124 597 aaPredicted RBP10.19□□□□□ -0.78
USP54-205ENST00000424265 PDAP1Q13442 181 aaKnown RBP10.19□□□□□ -0.78
USP54-205ENST00000424265 NR1I3Q14994 352 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 FAM153CQ494X1 144 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 MMEL1Q495T6 779 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 NT5DC4Q86YG4 428 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 BRSK2Q8IWQ3 736 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 MREGQ8N565 214 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 NIFKQ9BYG3 293 aaKnown RBP10.19□□□□□ -0.78
USP54-205ENST00000424265 ZNF212Q9UDV6 495 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 FAM153AQ9UHL3 310 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 FER1L6Q2WGJ9 1857 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 PRLP01236 227 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 TRIML2Q8N7C3 387 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 RFWD2Q8NHY2 731 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 U2AF1L4Q8WU68 220 aaKnown RBP10.19□□□□□ -0.78
USP54-205ENST00000424265 GPR20Q99678 358 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 TUBB6Q9BUF5 446 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 APOL6Q9BWW8 343 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 HAO1Q9UJM8 370 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 OGTO15294 1046 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 PAEPP09466 180 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 KRT20P35900 424 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 ASPHQ12797 758 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 CAMK2BQ13554 666 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 KRT81Q14533 505 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 CCDC81Q6ZN84 652 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 CCDC60Q8IWA6 550 aaPredicted RBP10.19□□□□□ -0.78
USP54-205ENST00000424265 ZNF507Q8TCN5 953 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 ERP27Q96DN0 273 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 HAPLN3Q96S86 360 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 C8orf4Q9NR00 106 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 COL20A1Q9P218 1284 aa10.19□□□□□ -0.78
USP54-205ENST00000424265 FAM47E-STBD1D6RA91 191 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 GYG2O15488 501 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 HNRNPCL1O60812 293 aaKnown RBP10.18□□□□□ -0.78
USP54-205ENST00000424265 PEX11AO75192 247 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 UNC5CO95185 931 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 CHRNB1P11230 501 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms