RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SIK3Q9Y2K2 1263 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 CHD4Q14839 1912 aa7.09□□□□□ -1.28
SCN1A-204ENST00000423058 NRKQ7Z2Y5 1582 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 A0A1W2PQC6 194 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 PHF20L1A8MW92 1017 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 TIMM44O43615 452 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 AP1G2O75843 785 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 LTKP29376 864 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 RAB27AP51159 221 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 PLOD1Q02809 727 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 ZNF280DQ6N043 979 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 TRPM8Q7Z2W7 1104 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 PLEKHH3Q7Z736 793 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 FAM167BQ9BTA0 163 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 KIFC1Q9BW19 673 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 ILKAPQ9H0C8 392 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 RACGAP1Q9H0H5 632 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 ANTXR1Q9H6X2 564 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 ANKEF1Q9NU02 776 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 TMEM39AQ9NV64 488 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 JCADQ9P266 1359 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 SLC9A3R1O14745 358 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 NCAM2O15394 837 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 SEC31AO94979 1220 aaKnown RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 PRDX5P30044 214 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 HPCAL1P37235 193 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 SERPINB8P50452 374 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 ZNF211Q13398 564 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 NFE2Q16621 373 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 PAN2Q504Q3 1202 aaKnown RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 SLC22A9Q8IVM8 553 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 MICU2Q8IYU8 434 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 LRRC4BQ9NT99 713 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 PCMTD2Q9NV79 361 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 TRPC4Q9UBN4 977 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 ZNF112Q9UJU3 913 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 TNFSF13BQ9Y275 285 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 A0A0G2JLW4 131 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 PIK3CDO00329 1044 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 RHOCP08134 193 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 BNC1Q01954 994 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 CTXN3Q4LDR2 81 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 GJC2Q5T442 439 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 IKBIPQ70UQ0 350 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 TMC7Q7Z402 723 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 RBBP8NLQ8NC74 664 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 NAT9Q9BTE0 207 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 MRPL9Q9BYD2 267 aaKnown RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 MYH3P11055 1940 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 EPHB2P29323 1055 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 FLT3P36888 993 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 FMO5P49326 533 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 PWP1Q13610 501 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 SPATA31A6Q5VVP1 1343 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 PRMT1Q99873 361 aaKnown RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 OMDQ99983 421 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 CNPPD1Q9BV87 410 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 PDS5AQ29RF7 1337 aaKnown RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 AGTP01019 485 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 THOP1P52888 689 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 PTPN12Q05209 780 aaKnown RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 TSNQ15631 228 aaKnown RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 GALNTL6Q49A17 601 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 CDC73Q6P1J9 531 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 NEK5Q6P3R8 708 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 ATP6V1G3Q96LB4 118 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 ABCB6Q9NP58 842 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 ADARB2Q9NS39 739 aaKnown RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 COPG2Q9UBF2 871 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 PPP2R3BQ9Y5P8 575 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 STAU1O95793 577 aaKnown RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 FGFR1P11362 822 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 ITGB6P18564 788 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 RRM1P23921 792 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 BCAT1P54687 386 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 PI16Q6UXB8 463 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 RINLQ6ZS11 566 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 SLC44A2Q8IWA5 706 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-204ENST00000423058 SLC35G2Q8TBE7 412 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 BHMTQ93088 406 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 THTPAQ9BU02 230 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 NIF3L1Q9GZT8 377 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 BATF3Q9NR55 127 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 DDIT4Q9NX09 232 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 USP18Q9UMW8 372 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 AP4S1Q9Y587 144 aa7.08□□□□□ -1.28
SCN1A-204ENST00000423058 NEDD4P46934 1319 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 TAF4O00268 1085 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 AIM2O14862 343 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 PLA2G6O60733 806 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 PAICSP22234 425 aaKnown RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SLC26A2P50443 739 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 PDK2Q15119 407 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SLC44A4Q53GD3 710 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 IFNEQ86WN2 208 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 KCNB2Q92953 911 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SGSM3Q96HU1 749 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 TMEM260Q9NX78 707 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SUCOQ9UBS9 1254 aaKnown RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 ITGB1BP2Q9UKP3 347 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms