RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 NOX5Q96PH1 765 aa17.9■□□□□ 0.46
COL7A1-202ENST00000422991 CPXM1Q96SM3 734 aa17.9■□□□□ 0.46
COL7A1-202ENST00000422991 FBXO44Q9H4M3 255 aa17.9■□□□□ 0.46
COL7A1-202ENST00000422991 LRRC4Q9HBW1 653 aa17.9■□□□□ 0.46
COL7A1-202ENST00000422991 WDR6Q9NNW5 1121 aaKnown RBP17.9■□□□□ 0.46
COL7A1-202ENST00000422991 ST7Q9NRC1 585 aa17.9■□□□□ 0.46
COL7A1-202ENST00000422991 SEPT11Q9NVA2 429 aaKnown RBP17.9■□□□□ 0.46
COL7A1-202ENST00000422991 USP3Q9Y6I4 520 aa17.9■□□□□ 0.46
COL7A1-202ENST00000422991 NRG2O14511 850 aaPredicted RBP17.89■□□□□ 0.45
COL7A1-202ENST00000422991 MBTPS2O43462 519 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 TADA3O75528 432 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 FGF19O95750 216 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 MYL4P12829 197 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 UNGP13051 313 aaPredicted RBP17.89■□□□□ 0.45
COL7A1-202ENST00000422991 TNFAIP3P21580 790 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 ACADSBP45954 432 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 CENPCQ03188 943 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 PTPN20Q4JDL3 420 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 CYP4A22Q5TCH4 519 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 GAREM2Q75VX8 874 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 PDZD4Q76G19 769 aaPredicted RBP17.89■□□□□ 0.45
COL7A1-202ENST00000422991 CCDC186Q7Z3E2 898 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 TMEM150AQ86TG1 271 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 SIX6OS1Q8N1H7 587 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 CPA5Q8WXQ8 436 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 FBXO32Q969P5 355 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 PPP1R13BQ96KQ4 1090 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 NECTIN4Q96NY8 510 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 PANX2Q96RD6 677 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 UHRF1Q96T88 793 aaPredicted RBP17.89■□□□□ 0.45
COL7A1-202ENST00000422991 SCML2Q9UQR0 700 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 NCANO14594 1321 aa17.89■□□□□ 0.45
COL7A1-202ENST00000422991 TCF20Q9UGU0 1960 aaKnown RBP17.88■□□□□ 0.45
COL7A1-202ENST00000422991 GOLGA6L6A8MZA4 724 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 E5RJQ4 531 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 PIK3R2O00459 728 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 DDX3XO00571 662 aaKnown RBP eCLIP17.88■□□□□ 0.45
COL7A1-202ENST00000422991 MOSPD3O75425 235 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 F11P03951 625 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 LCP1P13796 627 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 GABRR2P28476 465 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 CDC25CP30307 473 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 EIF4A3P38919 411 aaKnown RBP17.88■□□□□ 0.45
COL7A1-202ENST00000422991 CDK17Q00537 523 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 TAF10Q12962 218 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 MAPK8IP2Q13387 824 aaPredicted RBP17.88■□□□□ 0.45
COL7A1-202ENST00000422991 CBX2Q14781 532 aaPredicted RBP17.88■□□□□ 0.45
COL7A1-202ENST00000422991 PM20D1Q6GTS8 502 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 TMEM110Q86TL2 294 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 VPS36Q86VN1 386 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 SCML4Q8N228 414 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 SLC30A5Q8TAD4 765 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.88■□□□□ 0.45
COL7A1-202ENST00000422991 SHKBP1Q8TBC3 707 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 OVCA2Q8WZ82 227 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 TCEAL4Q96EI5 215 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 SLITRK1Q96PX8 696 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 ULBP1Q9BZM6 244 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 POMKQ9H5K3 350 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 CNGB3Q9NQW8 809 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 GMIPQ9P107 970 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 TJP2Q9UDY2 1190 aa17.88■□□□□ 0.45
COL7A1-202ENST00000422991 DOCK8Q8NF50 2099 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 NCOR1O75376 2440 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 SSU72P8A0A1W2PR75 194 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 A0A1W2PRU2 124 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 TNFRSF10AO00220 468 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 ZNF197O14709 1029 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 FBXO21O94952 628 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 ZBED1O96006 694 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 USP17L7P0C7H9 530 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 CEBPBP17676 345 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 FECHP22830 423 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 FSHRP23945 695 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 NSFP46459 744 aaKnown RBP17.87■□□□□ 0.45
COL7A1-202ENST00000422991 PUS10Q3MIT2 529 aaKnown RBP17.87■□□□□ 0.45
COL7A1-202ENST00000422991 BHLHA9Q7RTU4 235 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 MSANTD4Q8NCY6 345 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 PDZD8Q8NEN9 1154 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 ITFG1Q8TB96 612 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 IPO4Q8TEX9 1081 aaKnown RBP17.87■□□□□ 0.45
COL7A1-202ENST00000422991 GCNAQ96QF7 691 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 CHP1Q99653 195 aa17.87■□□□□ 0.45
COL7A1-202ENST00000422991 MRPS23Q9Y3D9 190 aaKnown RBP17.87■□□□□ 0.45
COL7A1-202ENST00000422991 NUP210Q8TEM1 1887 aaPredicted RBP17.86■□□□□ 0.45
COL7A1-202ENST00000422991 FAM170AA1A519 330 aa17.86■□□□□ 0.45
COL7A1-202ENST00000422991 PAPSS1O43252 624 aaPredicted RBP17.86■□□□□ 0.45
COL7A1-202ENST00000422991 ERBB2P04626 1255 aa17.86■□□□□ 0.45
COL7A1-202ENST00000422991 ZDHHC11BP0C7U3 371 aa17.86■□□□□ 0.45
COL7A1-202ENST00000422991 MMP8P22894 467 aa17.86■□□□□ 0.45
COL7A1-202ENST00000422991 GABRB2P47870 512 aa17.86■□□□□ 0.45
COL7A1-202ENST00000422991 PPP3CCP48454 512 aa17.86■□□□□ 0.45
COL7A1-202ENST00000422991 DAOAP59103 153 aa17.86■□□□□ 0.45
COL7A1-202ENST00000422991 ERICH1Q86X53 443 aa17.86■□□□□ 0.45
COL7A1-202ENST00000422991 PHF13Q86YI8 300 aaPredicted RBP17.86■□□□□ 0.45
COL7A1-202ENST00000422991 CLEC4CQ8WTT0 213 aa17.86■□□□□ 0.45
COL7A1-202ENST00000422991 IRGQQ8WZA9 623 aa17.86■□□□□ 0.45
COL7A1-202ENST00000422991 MIS12Q9H081 205 aa17.86■□□□□ 0.45
COL7A1-202ENST00000422991 ATXN3LQ9H3M9 355 aa17.86■□□□□ 0.45
COL7A1-202ENST00000422991 SYNCQ9H7C4 482 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms