RNA–Protein interactions for RNA: ENST00000420503.1

LINC00339-203, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 771 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-203ENST00000420503 BCCIPQ9P287 314 aaKnown RBP eCLIP13.72□□□□□ -0.21
LINC00339-203ENST00000420503 PCDHB13Q9Y5F0 798 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 DMXL2Q8TDJ6 3036 aa13.72□□□□□ -0.21
LINC00339-203ENST00000420503 SRRM3A6NNA2 597 aaPredicted RBP13.71□□□□□ -0.21
LINC00339-203ENST00000420503 CLIC2O15247 247 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 TGFB1I1O43294 461 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 TNNC2P02585 160 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 IRF1P10914 325 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 ADH5P11766 374 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 CSRP1P21291 193 aaKnown RBP13.71□□□□□ -0.21
LINC00339-203ENST00000420503 ANXA13P27216 316 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 CASP4P49662 377 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 CDH8P55286 799 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 NOP14P78316 857 aaKnown RBP13.71□□□□□ -0.21
LINC00339-203ENST00000420503 MRPS21P82921 87 aaKnown RBP13.71□□□□□ -0.21
LINC00339-203ENST00000420503 MYO1EQ12965 1108 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 ORC1Q13415 861 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 BBS7Q8IWZ6 715 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 PLEKHO2Q8TD55 490 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 CCDC127Q96BQ5 260 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 P2RY11Q96G91 374 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 C8orf48Q96LL4 319 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 ACOX2Q99424 681 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 SDCBP2Q9H190 292 aa13.71□□□□□ -0.21
LINC00339-203ENST00000420503 CHORDC1Q9UHD1 332 aaPredicted RBP13.71□□□□□ -0.21
LINC00339-203ENST00000420503 ZNF233A6NK53 670 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 TRIM66O15016 1216 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 MAP3K13O43283 966 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 APODP05090 189 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 CFIP05156 583 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 CEACAM1P13688 526 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 PTPN1P18031 435 aaKnown RBP13.7□□□□□ -0.22
LINC00339-203ENST00000420503 GABRG2P18507 467 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 GNL1P36915 607 aaPredicted RBP13.7□□□□□ -0.22
LINC00339-203ENST00000420503 CYP2J2P51589 502 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 MYL6P60660 151 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 DUOXA2Q1HG44 320 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 PAQR9Q6ZVX9 377 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 LPCAT2Q7L5N7 544 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 DPH6Q7L8W6 267 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 TMEM25Q86YD3 366 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 WDR49Q8IV35 697 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 NELFCDQ8IXH7 590 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 ETFBKMTQ8IXQ9 262 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 PGBD3Q8N328 593 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 WHAMMQ8TF30 809 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 ZCCHC14Q8WYQ9 949 aaKnown RBP13.7□□□□□ -0.22
LINC00339-203ENST00000420503 EXOC4Q96A65 974 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 GTPBP2Q9BX10 602 aaKnown RBP13.7□□□□□ -0.22
LINC00339-203ENST00000420503 SNX25Q9H3E2 840 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 FOXD4L1Q9NU39 408 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 GMIPQ9P107 970 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 CALCOCO1Q9P1Z2 691 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 NXF1Q9UBU9 619 aaKnown RBP13.7□□□□□ -0.22
LINC00339-203ENST00000420503 EVLQ9UI08 416 aaPredicted RBP13.7□□□□□ -0.22
LINC00339-203ENST00000420503 PILRBQ9UKJ0 227 aa13.7□□□□□ -0.22
LINC00339-203ENST00000420503 KNL1Q8NG31 2342 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 TNFRSF10BO14763 440 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 TULP3O75386 442 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 BEST1O76090 585 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 SIM1P81133 766 aaPredicted RBP13.69□□□□□ -0.22
LINC00339-203ENST00000420503 E2F4Q16254 413 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 SNRNP35Q16560 246 aaKnown RBP13.69□□□□□ -0.22
LINC00339-203ENST00000420503 WDR72Q3MJ13 1102 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 LYSMD4Q5XG99 296 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 EGFLAMQ63HQ2 1017 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 SCARA5Q6ZMJ2 495 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 CCDC73Q6ZRK6 1079 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 EPM2AIP1Q7L775 607 aaPredicted RBP13.69□□□□□ -0.22
LINC00339-203ENST00000420503 PIP4P1Q86T03 277 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 SYT12Q8IV01 421 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 SLC41A1Q8IVJ1 513 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 FBXO32Q969P5 355 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 CAMK1GQ96NX5 476 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 XYLT2Q9H1B5 865 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 AGPAT3Q9NRZ7 376 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 HMGXB4Q9UGU5 601 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.69□□□□□ -0.22
LINC00339-203ENST00000420503 RAD54BQ9Y620 910 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 MYH10P35580 1976 aa13.69□□□□□ -0.22
LINC00339-203ENST00000420503 DSPP15924 2871 aaKnown RBP13.69□□□□□ -0.22
LINC00339-203ENST00000420503 FREM2Q5SZK8 3169 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 A0A0A0MRY4 1105 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.68□□□□□ -0.22
LINC00339-203ENST00000420503 A0A1W2PQF6 199 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 A8MXQ7 604 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 TAF4O00268 1085 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 TACC1O75410 805 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 ALDH1A2O94788 518 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 TBX18O95935 607 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 ADH1CP00326 375 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 TNNI1P19237 187 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 SYT1P21579 422 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 YWHAQP27348 245 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 TXLNAP40222 546 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 GRIA2P42262 883 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 CYP24A1Q07973 514 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 CUL4AQ13619 759 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 ALCAMQ13740 583 aa13.68□□□□□ -0.22
LINC00339-203ENST00000420503 MAPRE1Q15691 268 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms