RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 ALG6Q9Y672 507 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 NUP210Q8TEM1 1887 aaPredicted RBP6.26□□□□□ -1.41
HMGB3-202ENST00000419110 DOCK4Q8N1I0 1966 aa6.26□□□□□ -1.41
HMGB3-202ENST00000419110 MIA3Q5JRA6 1907 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 TCRBV5S1A1TA0A578 114 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 MYBPHLA2RUH7 354 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 TRIM43BA6NCK2 446 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 TMEM191CA6NGB0 347 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 F8W810 466 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 CCDC188H7C350 402 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 TULP2O00295 520 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 PIK3R2O00459 728 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 CLDN5O00501 218 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 ZNF185O15231 689 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 DDX3YO15523 660 aaKnown RBP6.25□□□□□ -1.41
HMGB3-202ENST00000419110 PAPSS1O43252 624 aaPredicted RBP6.25□□□□□ -1.41
HMGB3-202ENST00000419110 CTIFO43310 598 aaKnown RBP6.25□□□□□ -1.41
HMGB3-202ENST00000419110 PRPSAP2O60256 369 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 SRGAP2O75044 1071 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 ATP2C2O75185 946 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 DGKIO75912 1065 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 ALDH2P05091 517 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 GALTP07902 379 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 GLI1P08151 1106 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 FGFR3P22607 806 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 MCM3P25205 808 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 GGCXP38435 758 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 PTPN9P43378 593 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 GLUD2P49448 558 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 SULT1E1P49888 294 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 ZNF143P52747 638 aaPredicted RBP6.25□□□□□ -1.41
HMGB3-202ENST00000419110 MAP3K7CLP57077 242 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 RPL7AP62424 266 aaKnown RBP6.25□□□□□ -1.41
HMGB3-202ENST00000419110 SLC6A3Q01959 620 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 ZNF252P-AS1Q0IIN9 211 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 SMARCB1Q12824 385 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 ELF2Q15723 593 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 PSMD5Q16401 504 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 PPP2R5EQ16537 467 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 SLC39A12Q504Y0 691 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 EFHC1Q5JVL4 640 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 LRRC38Q5VT99 294 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 KIAA1841Q6NSI8 718 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 PMF1Q6P1K2 205 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 FAM117BQ6P1L5 589 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 VSTM1Q6UX27 236 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 CD300LGQ6UXG3 332 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.25□□□□□ -1.41
HMGB3-202ENST00000419110 UBE2Q1Q7Z7E8 422 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 TMEM110Q86TL2 294 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 CEP57Q86XR8 500 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 KATNAL2Q8IYT4 538 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 WDTC1Q8N5D0 677 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 EMC1Q8N766 993 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 SPPL2BQ8TCT7 592 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 ACTRT1Q8TDG2 376 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 SLC35F5Q8WV83 523 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 KCTD13Q8WZ19 329 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 KRT35Q92764 455 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 CD101Q93033 1021 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 TRIM43Q96BQ3 446 aaPredicted RBP6.25□□□□□ -1.41
HMGB3-202ENST00000419110 RUNDC3BQ96NL0 473 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 LBHD1Q9BQE6 289 aaPredicted RBP6.25□□□□□ -1.41
HMGB3-202ENST00000419110 RTP3Q9BQQ7 232 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 CNPY3Q9BT09 278 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 B3GNT5Q9BYG0 378 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 TRIM7Q9C029 511 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 ZCWPW1Q9H0M4 648 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 NGRNQ9NPE2 291 aaKnown RBP6.25□□□□□ -1.41
HMGB3-202ENST00000419110 CNGB3Q9NQW8 809 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 TJP2Q9UDY2 1190 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.25□□□□□ -1.41
HMGB3-202ENST00000419110 RASAL2Q9UJF2 1139 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 MTUS1Q9ULD2 1270 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 PCDHB5Q9Y5E4 795 aa6.25□□□□□ -1.41
HMGB3-202ENST00000419110 V9GYY5 206 aaPredicted RBP6.25□□□□□ -1.41
HMGB3-202ENST00000419110 LRRD1A4D1F6 860 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 C2CD4BA6NLJ0 364 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 KRIT1O00522 736 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 CAPN9O14815 690 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 PHF2O75151 1096 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 LRCH4O75427 683 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 GRAP2O75791 330 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 OAZ2O95190 189 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 FGGP02679 453 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 SOD2P04179 222 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 ACRP10323 421 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 PDGFRAP16234 1089 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 EN2P19622 333 aaPredicted RBP6.24□□□□□ -1.41
HMGB3-202ENST00000419110 BDNFP23560 247 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 DNAJB2P25686 324 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 RFC1P35251 1148 aaPredicted RBP6.24□□□□□ -1.41
HMGB3-202ENST00000419110 PCK1P35558 622 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 FLT3P36888 993 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 PBX3P40426 434 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 MAGEA11P43364 429 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 RPL34P49207 117 aaKnown RBP6.24□□□□□ -1.41
HMGB3-202ENST00000419110 TKTL1P51854 596 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 SLC5A3P53794 718 aa6.24□□□□□ -1.41
HMGB3-202ENST00000419110 DAOAP59103 153 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms