RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 TUBA8Q9NY65 449 aaPredicted RBP7.59□□□□□ -1.2
SCN9A-202ENST00000409435 SUSD2Q9UGT4 822 aa7.59□□□□□ -1.2
SCN9A-202ENST00000409435 ITGA11Q9UKX5 1188 aa7.59□□□□□ -1.2
SCN9A-202ENST00000409435 ZNF148Q9UQR1 794 aa7.59□□□□□ -1.2
SCN9A-202ENST00000409435 SLC30A1Q9Y6M5 507 aa7.59□□□□□ -1.2
SCN9A-202ENST00000409435 CCDC195A0A1B0GUA6 201 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 PIK3R2O00459 728 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 GJA9P57773 515 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 EFCAB3Q8N7B9 438 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 PPP1R13BQ96KQ4 1090 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 TRAIPQ9BWF2 469 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 SLC39A10Q9ULF5 831 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 SPACA6W5XKT8 324 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 PDZK1P1A8MUH7 402 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 GSTA4O15217 222 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 RASSF9O75901 435 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 FGF18O76093 207 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 FSBPO95073 299 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 ESRRAP11474 423 aaPredicted RBP7.58□□□□□ -1.2
SCN9A-202ENST00000409435 CSTF1Q05048 431 aaKnown RBP7.58□□□□□ -1.2
SCN9A-202ENST00000409435 CST9Q5W186 159 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 TYW1BQ6NUM6 668 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 KCNT2Q6UVM3 1135 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 ZNF852Q6ZMS4 543 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 C16orf59Q7L2K0 433 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 RABEPKQ7Z6M1 372 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 C11orf74Q86VG3 221 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 VSIG10LQ86VR7 867 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 TAB3Q8N5C8 712 aaPredicted RBP7.58□□□□□ -1.2
SCN9A-202ENST00000409435 B3GALNT2Q8NCR0 500 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 GDPD5Q8WTR4 605 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 ASZ1Q8WWH4 475 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 HDAC11Q96DB2 347 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 SMARCD1Q96GM5 515 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 OSBPL3Q9H4L5 887 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 SYTL2Q9HCH5 934 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 TMEM161AQ9NX61 479 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 GTF2IRD1Q9UHL9 959 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 TOPAZ1Q8N9V7 1692 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 LMO7Q8WWI1 1683 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 RGPD1P0DJD0 1748 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 SGK1O00141 431 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 RECQL4O94761 1208 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 SLC9A5Q14940 896 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 CYP2U1Q7Z449 544 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 IL12RB2Q99665 862 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 DNAJC12Q9UKB3 198 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 MAPK13O15264 365 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 TEX33O43247 280 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 FBXO21O94952 628 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 HOXB8P17481 243 aaPredicted RBP7.58□□□□□ -1.2
SCN9A-202ENST00000409435 DDX5P17844 614 aaKnown RBP7.58□□□□□ -1.2
SCN9A-202ENST00000409435 NMT1P30419 496 aaKnown RBP7.58□□□□□ -1.2
SCN9A-202ENST00000409435 NLRP12P59046 1061 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 ARID5BQ14865 1188 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 ANKRD40Q6AI12 368 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 SZRD1Q7Z422 152 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 CDC26Q8NHZ8 85 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 HMGB4Q8WW32 186 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 MKL1Q969V6 931 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 CYTH2Q99418 400 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 DMAP1Q9NPF5 467 aaPredicted RBP7.58□□□□□ -1.2
SCN9A-202ENST00000409435 CFAP73A6NFT4 308 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 DCTN3O75935 186 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 IL1BP01584 269 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 MUTP22033 750 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 RBMS1P29558 406 aaKnown RBP7.58□□□□□ -1.2
SCN9A-202ENST00000409435 S100A5P33763 92 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 FANCCQ00597 558 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 SRSF11Q05519 484 aaKnown RBP7.58□□□□□ -1.2
SCN9A-202ENST00000409435 LRRC63Q05C16 580 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 ACTN3Q08043 901 aaPredicted RBP7.58□□□□□ -1.2
SCN9A-202ENST00000409435 FUT10Q6P4F1 479 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 OR8D1Q8WZ84 308 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 SENP1Q9P0U3 644 aa7.58□□□□□ -1.2
SCN9A-202ENST00000409435 COL16A1Q07092 1604 aaPredicted RBP7.57□□□□□ -1.2
SCN9A-202ENST00000409435 TMEM247A6NEH6 219 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 CYP2A6P11509 494 aaPredicted RBP7.57□□□□□ -1.2
SCN9A-202ENST00000409435 KELP23276 732 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 SERPINB3P29508 390 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 AP2B1P63010 937 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 MESDQ14696 234 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 ANKS6Q68DC2 871 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 UBE2Q1Q7Z7E8 422 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 ICA1LQ8NDH6 482 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 KIAA1143Q96AT1 154 aaPredicted RBP7.57□□□□□ -1.2
SCN9A-202ENST00000409435 KLHL11Q9NVR0 708 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 DNMT3LQ9UJW3 386 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 CDY1Q9Y6F8 540 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 IFRD1O00458 451 aaPredicted RBP7.57□□□□□ -1.2
SCN9A-202ENST00000409435 GFPT2O94808 682 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 H2AFZP0C0S5 128 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 NSUN2Q08J23 767 aaKnown RBP eCLIP7.57□□□□□ -1.2
SCN9A-202ENST00000409435 TUSC3Q13454 348 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 ACOX1Q15067 660 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 PKN1Q16512 942 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 LONRF2Q1L5Z9 754 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 TRIM16LQ309B1 348 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 C2orf27AQ580R0 203 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 FAXCQ5TGI0 409 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms