RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 EIF3HO15372 352 aaKnown RBP eCLIP13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 FGF18O76093 207 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 SKIP12755 728 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 PMS2P54278 862 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 COPS2P61201 443 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 NOMO3P69849 1222 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 PPP1R7Q15435 360 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 SGO2Q562F6 1265 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 TTMPQ5BVD1 217 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 DNAJC21Q5F1R6 531 aaKnown RBP13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 UBXN11Q5T124 520 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 C6orf118Q5T5N4 469 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 DENND2CQ68D51 928 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 PLEKHA7Q6IQ23 1121 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 LRRC31Q6UY01 552 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 MON1BQ7L1V2 547 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 PRELID2Q8N945 189 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 C3orf20Q8ND61 904 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 ATL2Q8NHH9 583 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 FEZF2Q8TBJ5 459 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 KRT35Q92764 455 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 ARL8AQ96BM9 186 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 ZBTB45Q96K62 511 aaPredicted RBP13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 TRAIPQ9BWF2 469 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 EIF2AQ9BY44 585 aaKnown RBP13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 TRIM6Q9C030 488 aaPredicted RBP13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 MIS12Q9H081 205 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 PABPC3Q9H361 631 aaKnown RBP13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 RPF1Q9H9Y2 349 aaKnown RBP13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 PTPRHQ9HD43 1115 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 FAM105AQ9NUU6 356 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 DDX56Q9NY93 547 aaKnown RBP13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 CDH22Q9UJ99 828 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 CPSF3Q9UKF6 684 aaKnown RBP13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 MYO10Q9HD67 2058 aa13.57□□□□□ -0.24
SMARCB1-203ENST00000407082 EBAG9O00559 213 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 NPTXRO95502 500 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 KRT14P02533 472 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 ASGR2P07307 311 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 NUDT17P0C025 328 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 ATP5DP30049 168 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 ATICP31939 592 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 RAB27AP51159 221 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 FAM189BP81408 668 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 UBE3AQ05086 875 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 ADCY2Q08462 1091 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 ZNF568Q3ZCX4 644 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 LRRC38Q5VT99 294 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 EEF1DP3Q658K8 133 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 CES5AQ6NT32 575 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 SYCE2Q6PIF2 218 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 TRMT10CQ7L0Y3 403 aaKnown RBP13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 DGLUCYQ7Z3D6 616 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 DDX42Q86XP3 938 aaKnown RBP eCLIP13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 ECHDC2Q86YB7 292 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 NT5DC4Q86YG4 428 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 KATNAL2Q8IYT4 538 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 RCOR2Q8IZ40 523 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 RNF169Q8NCN4 708 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 EXD1Q8NHP7 514 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 CPA5Q8WXQ8 436 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 CYFIP2Q96F07 1278 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 ROPN1BQ9BZX4 212 aaPredicted RBP13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 DNAI2Q9GZS0 605 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 PLEKHA4Q9H4M7 779 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 ROPN1Q9HAT0 212 aaPredicted RBP13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.56□□□□□ -0.242e-9■■■■■ 192
SMARCB1-203ENST00000407082 ENTPD7Q9NQZ7 604 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 WDR35Q9P2L0 1181 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 LIMD1Q9UGP4 676 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 PCDHGC3Q9UN70 934 aa13.56□□□□□ -0.24
SMARCB1-203ENST00000407082 KIAA1671Q9BY89 1806 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 C2CD4DB7Z1M9 353 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 ATMINO43313 823 aaPredicted RBP13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 ZNF623O75123 536 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 EOMESO95936 686 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 WEE2P0C1S8 567 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 MCF2P10911 925 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 HARSP12081 509 aaKnown RBP13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 RARGP13631 454 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 PROZP22891 400 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 RRM1P23921 792 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 CA8P35219 290 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 ZNF132P52740 706 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 PLTPP55058 493 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 BYSLQ13895 437 aaKnown RBP13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 PIGHQ14442 188 aaPredicted RBP13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 CCNG2Q16589 344 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 DCAF4L1Q3SXM0 396 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 LMBRD2Q68DH5 695 aaPredicted RBP13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 ADAT2Q7Z6V5 191 aaKnown RBP13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 ZNF606Q8WXB4 792 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 TRIM51Q9BSJ1 452 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 TMEM109Q9BVC6 243 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 FRMD8P1Q9BZ68 369 aaPredicted RBP13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 TRIM31Q9BZY9 425 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 HAPLN2Q9GZV7 340 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 ASB7Q9H672 318 aa13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 ELAC1Q9H777 363 aaKnown RBP13.55□□□□□ -0.24
SMARCB1-203ENST00000407082 ZDHHC18Q9NUE0 388 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms