RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 NSUN3Q9H649 340 aaKnown RBP19■□□□□ 0.63
SDC1-203ENST00000403076 MRPL47Q9HD33 250 aaKnown RBP19■□□□□ 0.63
SDC1-203ENST00000403076 AVENQ9NQS1 362 aaPredicted RBP19■□□□□ 0.63
SDC1-203ENST00000403076 GUCA1BQ9UMX6 200 aa19■□□□□ 0.63
SDC1-203ENST00000403076 SCINQ9Y6U3 715 aa19■□□□□ 0.63
SDC1-203ENST00000403076 SART1O43290 800 aaKnown RBP18.99■□□□□ 0.63
SDC1-203ENST00000403076 CSH1P0DML2 217 aa18.99■□□□□ 0.63
SDC1-203ENST00000403076 CSH2P0DML3 217 aa18.99■□□□□ 0.63
SDC1-203ENST00000403076 MRPS5P82675 430 aaKnown RBP18.99■□□□□ 0.63
SDC1-203ENST00000403076 MTMR3Q13615 1198 aa18.99■□□□□ 0.63
SDC1-203ENST00000403076 DUSP6Q16828 381 aa18.99■□□□□ 0.63
SDC1-203ENST00000403076 DCUN1D2Q6PH85 259 aa18.99■□□□□ 0.63
SDC1-203ENST00000403076 ELMOD1Q8N336 334 aa18.99■□□□□ 0.63
SDC1-203ENST00000403076 C3orf20Q8ND61 904 aa18.99■□□□□ 0.63
SDC1-203ENST00000403076 CLEC4CQ8WTT0 213 aa18.99■□□□□ 0.63
SDC1-203ENST00000403076 RFFLQ8WZ73 363 aa18.99■□□□□ 0.63
SDC1-203ENST00000403076 NDRG1Q92597 394 aaKnown RBP18.99■□□□□ 0.63
SDC1-203ENST00000403076 LRCH3Q96II8 777 aa18.99■□□□□ 0.63
SDC1-203ENST00000403076 CDCA3Q99618 268 aaPredicted RBP18.99■□□□□ 0.63
SDC1-203ENST00000403076 NUP85Q9BW27 656 aa18.99■□□□□ 0.63
SDC1-203ENST00000403076 EHD2Q9NZN4 543 aa18.99■□□□□ 0.63
SDC1-203ENST00000403076 HCFC2Q9Y5Z7 792 aa18.99■□□□□ 0.63
SDC1-203ENST00000403076 KRT3P12035 628 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 YWHAQP27348 245 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 RNASE9P60153 205 aaKnown RBP18.98■□□□□ 0.63
SDC1-203ENST00000403076 EFHC1Q5JVL4 640 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 PLEKHA7Q6IQ23 1121 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 ITIH5Q86UX2 942 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 REXO1L1PQ8IX06 675 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 RHOT2Q8IXI1 618 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 C17orf53Q8N3J3 647 aaPredicted RBP18.98■□□□□ 0.63
SDC1-203ENST00000403076 SLC35G2Q8TBE7 412 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 HDAC7Q8WUI4 952 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 GOLGA1Q92805 767 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 FBXO32Q969P5 355 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 FAM149B1Q96BN6 582 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 FAM161BQ96MY7 647 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 METTL5Q9NRN9 209 aaKnown RBP18.98■□□□□ 0.63
SDC1-203ENST00000403076 COMMD8Q9NX08 183 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 TRIM10Q9UDY6 481 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 USP3Q9Y6I4 520 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 DUSP10Q9Y6W6 482 aa18.98■□□□□ 0.63
SDC1-203ENST00000403076 COL4A4P53420 1690 aaPredicted RBP18.97■□□□□ 0.63
SDC1-203ENST00000403076 NCANO14594 1321 aa18.97■□□□□ 0.63
SDC1-203ENST00000403076 MACROD2A1Z1Q3 448 aa18.97■□□□□ 0.63
SDC1-203ENST00000403076 GRAP2O75791 330 aa18.97■□□□□ 0.63
SDC1-203ENST00000403076 GJB6O95452 261 aa18.97■□□□□ 0.63
SDC1-203ENST00000403076 IGFBP4P22692 258 aa18.97■□□□□ 0.63
SDC1-203ENST00000403076 DAOAP59103 153 aa18.97■□□□□ 0.63
SDC1-203ENST00000403076 USP46P62068 366 aa18.97■□□□□ 0.63
SDC1-203ENST00000403076 MAMLD1Q13495 774 aa18.97■□□□□ 0.63
SDC1-203ENST00000403076 TCEAL5Q5H9L2 206 aa18.97■□□□□ 0.63
SDC1-203ENST00000403076 OLFML1Q6UWY5 402 aa18.97■□□□□ 0.63
SDC1-203ENST00000403076 RTL10Q7L3V2 364 aa18.97■□□□□ 0.63
SDC1-203ENST00000403076 ZNF512Q96ME7 567 aaPredicted RBP18.97■□□□□ 0.63
SDC1-203ENST00000403076 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.97■□□□□ 0.63
SDC1-203ENST00000403076 LMCD1Q9NZU5 365 aa18.97■□□□□ 0.63
SDC1-203ENST00000403076 UVRAGQ9P2Y5 699 aa18.97■□□□□ 0.63
SDC1-203ENST00000403076 ASB3Q9Y575 518 aa18.97■□□□□ 0.63
SDC1-203ENST00000403076 A0A0A6YYK5 440 aaPredicted RBP18.96■□□□□ 0.63
SDC1-203ENST00000403076 GOLGA6L9A6NEM1 432 aa18.96■□□□□ 0.63
SDC1-203ENST00000403076 SIGLEC16A6NMB1 481 aa18.96■□□□□ 0.63
SDC1-203ENST00000403076 USP27XA6NNY8 438 aa18.96■□□□□ 0.63
SDC1-203ENST00000403076 BUB1O43683 1085 aa18.96■□□□□ 0.63
SDC1-203ENST00000403076 ZMYND10O75800 440 aa18.96■□□□□ 0.63
SDC1-203ENST00000403076 MSNP26038 577 aaKnown RBP18.96■□□□□ 0.63
SDC1-203ENST00000403076 GTF2F1P35269 517 aaKnown RBP eCLIP18.96■□□□□ 0.63
SDC1-203ENST00000403076 ARHGAP25P42331 645 aa18.96■□□□□ 0.63
SDC1-203ENST00000403076 GSCP56915 257 aaPredicted RBP18.96■□□□□ 0.63
SDC1-203ENST00000403076 PM20D1Q6GTS8 502 aa18.96■□□□□ 0.63
SDC1-203ENST00000403076 DNAJB7Q7Z6W7 309 aaPredicted RBP18.96■□□□□ 0.63
SDC1-203ENST00000403076 ZSCAN30Q86W11 494 aa18.96■□□□□ 0.63
SDC1-203ENST00000403076 FEZF2Q8TBJ5 459 aa18.96■□□□□ 0.63
SDC1-203ENST00000403076 ZNF564Q8TBZ8 553 aaPredicted RBP18.96■□□□□ 0.63
SDC1-203ENST00000403076 IRGQQ8WZA9 623 aa18.96■□□□□ 0.63
SDC1-203ENST00000403076 PIWIL1Q96J94 861 aaKnown RBP18.96■□□□□ 0.63
SDC1-203ENST00000403076 MCEEQ96PE7 176 aa18.96■□□□□ 0.63
SDC1-203ENST00000403076 SLITRK1Q96PX8 696 aa18.96■□□□□ 0.63
SDC1-203ENST00000403076 PLXNA3P51805 1871 aa18.96■□□□□ 0.63
SDC1-203ENST00000403076 BTNL10A8MVZ5 291 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 CCL16O15467 120 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 RFPL2O75678 378 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 ABL1P00519 1130 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 SCNN1AP37088 669 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 TAF10Q12962 218 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 TAF5Q15542 800 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 IFI16Q16666 785 aaKnown RBP18.95■□□□□ 0.62
SDC1-203ENST00000403076 ZNF662Q6ZS27 426 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 SLC26A9Q7LBE3 791 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 SCML4Q8N228 414 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 GAS2L1Q99501 681 aaPredicted RBP18.95■□□□□ 0.62
SDC1-203ENST00000403076 OSGEPQ9NPF4 335 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 KCND1Q9NSA2 647 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 IL37Q9NZH6 218 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 SCML2Q9UQR0 700 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 PAXBP1Q9Y5B6 917 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 CHD9Q3L8U1 2897 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 LAMA2P24043 3122 aaKnown RBP18.95■□□□□ 0.62
SDC1-203ENST00000403076 TCRBV5S1A1TA0A578 114 aa18.95■□□□□ 0.62
SDC1-203ENST00000403076 YJEFN3A6XGL0 299 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms