RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 VSTM4Q8IW00 320 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 OR10T2Q8NGX3 314 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 FOXJ1Q92949 421 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 KAT5Q92993 513 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 COL26A1Q96A83 441 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 MRPL45Q9BRJ2 306 aaKnown RBP9.77□□□□□ -0.85
VPS53-203ENST00000401468 LSM14BQ9BX40 385 aaKnown RBP9.77□□□□□ -0.85
VPS53-203ENST00000401468 STK33Q9BYT3 514 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 ZCWPW1Q9H0M4 648 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 CRISPLD1Q9H336 500 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 PLEKHA4Q9H4M7 779 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 TBC1D17Q9HA65 648 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 CISHQ9NSE2 258 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 ZDHHC7Q9NXF8 308 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 CEP72Q9P209 647 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 MTF2Q9Y483 593 aaPredicted RBP9.77□□□□□ -0.85
VPS53-203ENST00000401468 FHOD1Q9Y613 1164 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 NCANO14594 1321 aa9.77□□□□□ -0.85
VPS53-203ENST00000401468 OR6C75A6NL08 312 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 F8VZ95 297 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 PES1O00541 588 aaKnown RBP9.76□□□□□ -0.85
VPS53-203ENST00000401468 ABLIM3O94929 683 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 VNN2O95498 520 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 RHOP08100 348 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 MYL4P12829 197 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 CPB1P15086 417 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 LMO2P25791 158 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 CDC25BP30305 580 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 MFAP3P55082 362 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 YWHAEP62258 255 aaKnown RBP9.76□□□□□ -0.85
VPS53-203ENST00000401468 SMARCB1Q12824 385 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 TBX2Q13207 712 aaPredicted RBP9.76□□□□□ -0.85
VPS53-203ENST00000401468 RAB33AQ14088 237 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 SPECC1LQ69YQ0 1117 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 ZNF280DQ6N043 979 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 GJB7Q6PEY0 223 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 RRAGAQ7L523 313 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 NPAS3Q8IXF0 933 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 FAM71AQ8IYT1 594 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 PPM1KQ8N3J5 372 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 ZSWIM3Q96MP5 696 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 MMS19Q96T76 1030 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 NUP58Q9BVL2 599 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 GRPEL1Q9HAV7 217 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 EPS15L1Q9UBC2 864 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 HSFX1Q9UBD0 423 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 CDH9Q9ULB4 789 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 MAFFQ9ULX9 164 aa9.76□□□□□ -0.85
VPS53-203ENST00000401468 ATRXP46100 2492 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 HCRTO43612 131 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 XYLBO75191 536 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 LRG1P02750 347 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 GYPCP04921 128 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 PAEPP09466 180 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 PCSK1P29120 753 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 GNL1P36915 607 aaPredicted RBP9.75□□□□□ -0.85
VPS53-203ENST00000401468 RAP1GAPP47736 663 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 NDST1P52848 882 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 RAD23BP54727 409 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 TWF1Q12792 350 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 LRMPQ12912 555 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 GPR17Q13304 367 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 TRIM14Q14142 442 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 MEA1Q16626 185 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 CCDC142Q17RM4 750 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 TUSC1Q2TAM9 212 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 INTS6LQ5JSJ4 861 aaKnown RBP9.75□□□□□ -0.85
VPS53-203ENST00000401468 STXBP5Q5T5C0 1151 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 TPGS2Q68CL5 300 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 TANGO2Q6ICL3 276 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 ELMSAN1Q6PJG2 1045 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 SCARA5Q6ZMJ2 495 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 RTL10Q7L3V2 364 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 ASCL5Q7RTU5 278 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.75□□□□□ -0.85
VPS53-203ENST00000401468 METTL23Q86XA0 190 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 THEM5Q8N1Q8 247 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 SLC4A11Q8NBS3 891 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 NEK11Q8NG66 645 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 TTC8Q8TAM2 541 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 SYN2Q92777 582 aaPredicted RBP9.75□□□□□ -0.85
VPS53-203ENST00000401468 TWNKQ96RR1 684 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 TRIM5Q9C035 493 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 UBE2TQ9NPD8 197 aaPredicted RBP9.75□□□□□ -0.85
VPS53-203ENST00000401468 CRTAC1Q9NQ79 661 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 FAM207AQ9NSI2 230 aaPredicted RBP9.75□□□□□ -0.85
VPS53-203ENST00000401468 DDX43Q9NXZ2 648 aaKnown RBP9.75□□□□□ -0.85
VPS53-203ENST00000401468 AIPL1Q9NZN9 384 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 HMGXB4Q9UGU5 601 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 DNAJC12Q9UKB3 198 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 CDH7Q9ULB5 785 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 CAPN11Q9UMQ6 739 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 MRPS23Q9Y3D9 190 aaKnown RBP9.75□□□□□ -0.85
VPS53-203ENST00000401468 INSL5Q9Y5Q6 135 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 R4GN57 208 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 CEP192Q8TEP8 1941 aa9.75□□□□□ -0.85
VPS53-203ENST00000401468 MYO18AQ92614 2054 aaKnown RBP9.75□□□□□ -0.85
VPS53-203ENST00000401468 GOLGA6L3A6NEY3 463 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 A8MXQ7 604 aa9.74□□□□□ -0.85
VPS53-203ENST00000401468 ANHXE9PGG2 379 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms