RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 ABCD1P33897 745 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 MSX2P35548 267 aaPredicted RBP17.77■□□□□ 0.44
PTPRA-205ENST00000399903 RGS2P41220 211 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 PEX3P56589 373 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 CBX3Q13185 183 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 PRKD1Q15139 912 aaPredicted RBP17.77■□□□□ 0.44
PTPRA-205ENST00000399903 KCTD21Q4G0X4 260 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 DNAL1Q4LDG9 190 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 NUDCD3Q8IVD9 361 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 FIZ1Q96SL8 496 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 MRPL1Q9BYD6 325 aaKnown RBP17.77■□□□□ 0.44
PTPRA-205ENST00000399903 TRIM49D1C9J1S8 452 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 NCF2P19878 526 aaPredicted RBP17.77■□□□□ 0.44
PTPRA-205ENST00000399903 MSLNQ13421 630 aaPredicted RBP17.77■□□□□ 0.44
PTPRA-205ENST00000399903 KBTBD12Q3ZCT8 623 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 LIN9Q5TKA1 542 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 CDHR3Q6ZTQ4 885 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 FAM172AQ8WUF8 416 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 RSAD2Q8WXG1 361 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 CATSPER2Q96P56 530 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 IFT122Q9HBG6 1241 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 LZTS1Q9Y250 596 aa17.77■□□□□ 0.44
PTPRA-205ENST00000399903 TCRBV7S3A2A0A539 114 aa17.77■□□□□ 0.43
PTPRA-205ENST00000399903 ADCY3O60266 1144 aa17.77■□□□□ 0.43
PTPRA-205ENST00000399903 NELFEP18615 380 aaKnown RBP17.77■□□□□ 0.43
PTPRA-205ENST00000399903 EFHC2Q5JST6 749 aa17.77■□□□□ 0.43
PTPRA-205ENST00000399903 C1orf220Q5T0J3 134 aa17.77■□□□□ 0.43
PTPRA-205ENST00000399903 KLC3Q6P597 504 aa17.77■□□□□ 0.43
PTPRA-205ENST00000399903 FBXL19Q6PCT2 694 aa17.77■□□□□ 0.43
PTPRA-205ENST00000399903 TRPM4Q8TD43 1214 aa17.77■□□□□ 0.43
PTPRA-205ENST00000399903 SRPK1Q96SB4 655 aaKnown RBP17.77■□□□□ 0.43
PTPRA-205ENST00000399903 MMP19Q99542 508 aa17.77■□□□□ 0.43
PTPRA-205ENST00000399903 SENP7Q9BQF6 1050 aa17.77■□□□□ 0.43
PTPRA-205ENST00000399903 WWP1Q9H0M0 922 aa17.77■□□□□ 0.43
PTPRA-205ENST00000399903 TUFT1Q9NNX1 390 aa17.77■□□□□ 0.43
PTPRA-205ENST00000399903 ZNF510Q9Y2H8 683 aa17.77■□□□□ 0.43
PTPRA-205ENST00000399903 BUD23O43709 281 aaKnown RBP17.76■□□□□ 0.43
PTPRA-205ENST00000399903 ADSSP30520 456 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 RPL7AP62424 266 aaKnown RBP17.76■□□□□ 0.43
PTPRA-205ENST00000399903 MORF4L2Q15014 288 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 DUS1LQ6P1R4 473 aaKnown RBP17.76■□□□□ 0.43
PTPRA-205ENST00000399903 HPS6Q86YV9 775 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 CRLF3Q8IUI8 442 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 ZNF276Q8N554 614 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 NLGN2Q8NFZ4 835 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 E2F7Q96AV8 911 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 ZBED3Q96IU2 234 aaPredicted RBP17.76■□□□□ 0.43
PTPRA-205ENST00000399903 INPP5FQ9Y2H2 1132 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 IVNS1ABPQ9Y6Y0 642 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 IQANK1A0A1B0GTG1 560 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 TBC1D12O60347 775 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 GK3PQ14409 553 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 CNGA3Q16281 694 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 KLHL38Q2WGJ6 581 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 ARHGEF16Q5VV41 709 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 KRT39Q6A163 491 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 TXNRD3NBQ6F5E7 133 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 SPOPLQ6IQ16 392 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 DCUN1D2Q6PH85 259 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 GSDMBQ8TAX9 411 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 EHMT1Q9H9B1 1298 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 BTBD7Q9P203 1132 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 DTNAQ9Y4J8 743 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 ZNF541Q9H0D2 1346 aa17.76■□□□□ 0.43
PTPRA-205ENST00000399903 TOP3BO95985 862 aaKnown RBP17.75■□□□□ 0.43
PTPRA-205ENST00000399903 MPP3Q13368 585 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 SNRNP35Q16560 246 aaKnown RBP17.75■□□□□ 0.43
PTPRA-205ENST00000399903 PPP6R3Q5H9R7 873 aaPredicted RBP17.75■□□□□ 0.43
PTPRA-205ENST00000399903 KCNT1Q5JUK3 1230 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 SPDYAQ5MJ70 313 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 FAM102BQ5T8I3 360 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 RNF111Q6ZNA4 994 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 TSHZ1Q6ZSZ6 1077 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 PDIK1LQ8N165 341 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 ACCSQ96QU6 501 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 SMIM31A0A1B0GVY4 71 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 DHX15O43143 795 aaKnown RBP17.75■□□□□ 0.43
PTPRA-205ENST00000399903 FKBP6O75344 327 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 AVILO75366 819 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 PCSK6P29122 969 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 GDF10P55107 478 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 NCKAP1LP55160 1127 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 RNASEH2BQ5TBB1 312 aaKnown RBP17.75■□□□□ 0.43
PTPRA-205ENST00000399903 SLC38A10Q9HBR0 1119 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 XPO7Q9UIA9 1087 aaKnown RBP17.75■□□□□ 0.43
PTPRA-205ENST00000399903 SOX13Q9UN79 622 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 PEX1O43933 1283 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 SH3BGRP55822 239 aaPredicted RBP17.75■□□□□ 0.43
PTPRA-205ENST00000399903 SLC44A4Q53GD3 710 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 SH3D19Q5HYK7 790 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 C1QTNF12Q5T7M4 302 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 SNRNP48Q6IEG0 339 aaKnown RBP17.75■□□□□ 0.43
PTPRA-205ENST00000399903 ALLCQ8N6M5 410 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 CNKSR2Q8WXI2 1034 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 RNF146Q9NTX7 359 aa17.75■□□□□ 0.43
PTPRA-205ENST00000399903 CCNE2O96020 404 aa17.74■□□□□ 0.43
PTPRA-205ENST00000399903 SLC18A1P54219 525 aa17.74■□□□□ 0.43
PTPRA-205ENST00000399903 PPIDQ08752 370 aaKnown RBP17.74■□□□□ 0.43
PTPRA-205ENST00000399903 ANKRD20A4Q4UJ75 823 aa17.74■□□□□ 0.43
PTPRA-205ENST00000399903 XKR9Q5GH70 373 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms