RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 EIF3CQ99613 913 aaKnown RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 LPIN3Q9BQK8 851 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 KRT82Q9NSB4 513 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 ARHGAP26Q9UNA1 814 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 LUC7L2Q9Y383 392 aaKnown RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 AP1G2O75843 785 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 MMEP08473 750 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 BMP1P13497 986 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 BRD2P25440 801 aaKnown RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 SNX16P57768 344 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 USP46P62068 366 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 PSMC1P62191 440 aaKnown RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 ASIC2Q16515 512 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 PTPN20Q4JDL3 420 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 SCARA5Q6ZMJ2 495 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 PIGZQ86VD9 579 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 ATAD1Q8NBU5 361 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 C3orf20Q8ND61 904 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 SLC7A14Q8TBB6 771 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 MSANTD3Q96H12 275 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 KLF16Q9BXK1 252 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 SMOC2Q9H3U7 446 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 MMRN2Q9H8L6 949 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 SLC2A4RGQ9NR83 387 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 FAM207AQ9NSI2 230 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 OLA1Q9NTK5 396 aaKnown RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 DOCK4Q8N1I0 1966 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 BDNFP23560 247 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 AIF1P55008 147 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 DENND5BQ6ZUT9 1274 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 MCOLN2Q8IZK6 566 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 TMEM35BQ8NCS4 154 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 MAFAQ8NHW3 353 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 HEXIM2Q96MH2 286 aaKnown RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 DDX23Q9BUQ8 820 aaKnown RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 PHF7Q9BWX1 381 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 MARK1Q9P0L2 795 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 STRIP2Q9ULQ0 834 aa7.39□□□□□ -1.23
LIMA1-202ENST00000394943 R3HCC1Q9Y3T6 440 aaKnown RBP7.39□□□□□ -1.23
LIMA1-202ENST00000394943 PLXND1Q9Y4D7 1925 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 A0A0A0MRY4 1105 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 CCDC195A0A1B0GUA6 201 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 SIGLEC16A6NMB1 481 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 CLDN5O00501 218 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 PAPSS1O43252 624 aaPredicted RBP7.38□□□□□ -1.23
LIMA1-202ENST00000394943 ADCY5O95622 1261 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 PDGFRBP09619 1106 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 SCAPQ12770 1279 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 ZNF77Q15935 545 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 SLC5A9Q2M3M2 681 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 KIAA0907Q7Z7F0 614 aaPredicted RBP7.38□□□□□ -1.23
LIMA1-202ENST00000394943 CEP57Q86XR8 500 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 ZNF683Q8IZ20 524 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 SLC20A1Q8WUM9 679 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 CPXM1Q96SM3 734 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 HAUS4Q9H6D7 363 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 TASP1Q9H6P5 420 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 OSER1Q9NX31 292 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 ARHGEF38Q9NXL2 777 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 HBS1LQ9Y450 684 aaKnown RBP7.38□□□□□ -1.23
LIMA1-202ENST00000394943 ZNF263O14978 683 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 CALB1P05937 261 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 RHOP08100 348 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 CPB1P15086 417 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 HOXC13P31276 330 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 ALDH1A3P47895 512 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 SLC6A3Q01959 620 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 HTR3DQ70Z44 454 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 PSTKQ8IV42 348 aaKnown RBP7.38□□□□□ -1.23
LIMA1-202ENST00000394943 ADHFE1Q8IWW8 467 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 ELMO3Q96BJ8 720 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 NPY6RQ99463 290 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 CERS4Q9HA82 394 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 NAGPAQ9UK23 515 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 CDH7Q9ULB5 785 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 USP15Q9Y4E8 981 aaPredicted RBP7.38□□□□□ -1.23
LIMA1-202ENST00000394943 KCNU1A8MYU2 1149 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 F8VP50 259 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 TMEM253P0C7T8 217 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 GPR15P49685 360 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 HTR4Q13639 388 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 DDX42Q86XP3 938 aaKnown RBP eCLIP7.38□□□□□ -1.23
LIMA1-202ENST00000394943 TMTC1Q8IUR5 882 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 CPXM2Q8N436 756 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 PPP1R13BQ96KQ4 1090 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 LMLNQ96KR4 655 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 ASB16Q96NS5 453 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 KCNK16Q96T55 309 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 CHRDQ9H2X0 955 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 ABCC13Q9NSE7 274 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 FBXO10Q9UK96 956 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 NEU3Q9UQ49 428 aa7.38□□□□□ -1.23
LIMA1-202ENST00000394943 SPTBN5Q9NRC6 3674 aaKnown RBP7.37□□□□□ -1.23
LIMA1-202ENST00000394943 TULP2O00295 520 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 ZBED1O96006 694 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 GLULP15104 373 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 CD58P19256 250 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 YWHAQP27348 245 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms