RNA–Protein interactions for RNA: ENST00000393408.7

CBX1-202, Transcript of chromobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX1, Length 2,422 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-202ENST00000393408 IL18RAPO95256 599 aa19.64■□□□□ 0.74
CBX1-202ENST00000393408 C1QAP02745 245 aa19.64■□□□□ 0.74
CBX1-202ENST00000393408 NFICP08651 508 aa19.64■□□□□ 0.74
CBX1-202ENST00000393408 TGFB3P10600 412 aa19.64■□□□□ 0.74
CBX1-202ENST00000393408 SERPINB3P29508 390 aa19.64■□□□□ 0.74
CBX1-202ENST00000393408 CDH6P55285 790 aa19.64■□□□□ 0.74
CBX1-202ENST00000393408 LY6KQ17RY6 165 aa19.64■□□□□ 0.74
CBX1-202ENST00000393408 CMPK2Q5EBM0 449 aa19.64■□□□□ 0.74
CBX1-202ENST00000393408 SYCP2LQ5T4T6 812 aa19.64■□□□□ 0.74
CBX1-202ENST00000393408 FAM102AQ5T9C2 384 aaPredicted RBP19.64■□□□□ 0.74
CBX1-202ENST00000393408 SH3PXD2AQ5TCZ1 1133 aa19.64■□□□□ 0.74
CBX1-202ENST00000393408 TRIM50Q86XT4 487 aa19.64■□□□□ 0.74
CBX1-202ENST00000393408 PRR11Q96HE9 360 aaPredicted RBP19.64■□□□□ 0.74
CBX1-202ENST00000393408 CDT1Q9H211 546 aa19.64■□□□□ 0.74
CBX1-202ENST00000393408 DCLRE1BQ9H816 532 aa19.64■□□□□ 0.74
CBX1-202ENST00000393408 FBXO6Q9NRD1 293 aaPredicted RBP19.64■□□□□ 0.74
CBX1-202ENST00000393408 M0QYV0 167 aa19.64■□□□□ 0.73
CBX1-202ENST00000393408 LMNAP02545 664 aaKnown RBP19.64■□□□□ 0.73
CBX1-202ENST00000393408 RXRBP28702 533 aa19.64■□□□□ 0.73
CBX1-202ENST00000393408 GPD2P43304 727 aa19.64■□□□□ 0.73
CBX1-202ENST00000393408 PTDSS1P48651 473 aaKnown RBP19.64■□□□□ 0.73
CBX1-202ENST00000393408 TRNP1Q6NT89 227 aa19.64■□□□□ 0.73
CBX1-202ENST00000393408 PRPF39Q86UA1 669 aaKnown RBP19.64■□□□□ 0.73
CBX1-202ENST00000393408 FAF2Q96CS3 445 aa19.64■□□□□ 0.73
CBX1-202ENST00000393408 TMEM176AQ96HP8 235 aa19.64■□□□□ 0.73
CBX1-202ENST00000393408 ZNF668Q96K58 619 aaPredicted RBP19.64■□□□□ 0.73
CBX1-202ENST00000393408 RPF1Q9H9Y2 349 aaKnown RBP19.64■□□□□ 0.73
CBX1-202ENST00000393408 USP29Q9HBJ7 922 aa19.64■□□□□ 0.73
CBX1-202ENST00000393408 NFKBIEO00221 500 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 SERPINB4P48594 390 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 TFDP2Q14188 446 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 RAB6CQ53S08 254 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 FAM47CQ5HY64 1035 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 LBX2Q6XYB7 198 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 CNPY3Q9BT09 278 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 RAB6CQ9H0N0 254 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 TTLL3Q9Y4R7 772 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 H7C0C1 242 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 INO80B-WBP1J3KQ70 363 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 GSC2O15499 205 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 LGR5O75473 907 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 GJB1P08034 283 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 GPD1P21695 349 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 ATP5OP48047 213 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 YWHAZP63104 245 aaKnown RBP19.63■□□□□ 0.73
CBX1-202ENST00000393408 KRT72Q14CN4 511 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 KHDC1Q4VXA5 237 aaKnown RBP19.63■□□□□ 0.73
CBX1-202ENST00000393408 ANGEL2Q5VTE6 544 aaKnown RBP19.63■□□□□ 0.73
CBX1-202ENST00000393408 SLC26A11Q86WA9 606 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 TEX9Q8N6V9 391 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 NLRP4Q96MN2 994 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 GPR20Q99678 358 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 FAM167BQ9BTA0 163 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 INO80BQ9C086 356 aaPredicted RBP19.63■□□□□ 0.73
CBX1-202ENST00000393408 BTBD7Q9P203 1132 aa19.63■□□□□ 0.73
CBX1-202ENST00000393408 KLF11O14901 512 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 FAM155BO75949 473 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 NEFHP12036 1026 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 ATP6V1C1P21283 382 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 ZBTB16Q05516 673 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 SH3D19Q5HYK7 790 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 TTC39BQ5VTQ0 682 aaPredicted RBP19.62■□□□□ 0.73
CBX1-202ENST00000393408 DSTYKQ6XUX3 929 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 EEPD1Q7L9B9 569 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 RIOX2Q8IUF8 465 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 EXOC8Q8IYI6 725 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 CFAP61Q8NHU2 1237 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 CXorf38Q8TB03 319 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 CFAP36Q96G28 342 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 RNF157Q96PX1 679 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 PAK5Q9P286 719 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 CORO1CQ9ULV4 474 aaPredicted RBP19.62■□□□□ 0.73
CBX1-202ENST00000393408 TNFSF13BQ9Y275 285 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 GJA3Q9Y6H8 435 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 C2CD4BA6NLJ0 364 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 TRIM49D1C9J1S8 452 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 ARIH2O95376 493 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 HMGCRP04035 888 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 ITGB3P05106 788 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 TMEM132AQ24JP5 1023 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 FAM182AQ5T1J6 154 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 C1orf228Q6PIY5 440 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 CDHR3Q6ZTQ4 885 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.62■□□□□ 0.73
CBX1-202ENST00000393408 RTP4Q96DX8 246 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 SRPK1Q96SB4 655 aaKnown RBP19.62■□□□□ 0.73
CBX1-202ENST00000393408 ASCC2Q9H1I8 757 aaPredicted RBP19.62■□□□□ 0.73
CBX1-202ENST00000393408 RAB6BQ9NRW1 208 aa19.62■□□□□ 0.73
CBX1-202ENST00000393408 LACTBL1A8MY62 500 aa19.61■□□□□ 0.73
CBX1-202ENST00000393408 COPEO14579 308 aa19.61■□□□□ 0.73
CBX1-202ENST00000393408 SKAP2O75563 359 aaPredicted RBP19.61■□□□□ 0.73
CBX1-202ENST00000393408 MBTD1Q05BQ5 628 aa19.61■□□□□ 0.73
CBX1-202ENST00000393408 C15orf59Q2T9L4 293 aaPredicted RBP19.61■□□□□ 0.73
CBX1-202ENST00000393408 HSDL1Q3SXM5 330 aa19.61■□□□□ 0.73
CBX1-202ENST00000393408 NOL9Q5SY16 702 aaKnown RBP19.61■□□□□ 0.73
CBX1-202ENST00000393408 TRIM68Q6AZZ1 485 aa19.61■□□□□ 0.73
CBX1-202ENST00000393408 UBA3Q8TBC4 463 aa19.61■□□□□ 0.73
CBX1-202ENST00000393408 MICAL1Q8TDZ2 1067 aa19.61■□□□□ 0.73
CBX1-202ENST00000393408 TRAPPC12Q8WVT3 735 aa19.61■□□□□ 0.73
CBX1-202ENST00000393408 RXFP2Q8WXD0 754 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms