RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 XPAP23025 273 aaPredicted RBP20.37■□□□□ 0.85
SHANK1-203ENST00000391813 YY1P25490 414 aa20.37■□□□□ 0.85
SHANK1-203ENST00000391813 NFIAQ12857 509 aa20.37■□□□□ 0.85
SHANK1-203ENST00000391813 Q4G0T1 1027 aa20.37■□□□□ 0.85
SHANK1-203ENST00000391813 DEPDC1Q5TB30 811 aa20.37■□□□□ 0.85
SHANK1-203ENST00000391813 CCDC80Q76M96 950 aa20.37■□□□□ 0.85
SHANK1-203ENST00000391813 VPS50Q96JG6 964 aa20.37■□□□□ 0.85
SHANK1-203ENST00000391813 SIK3Q9Y2K2 1263 aa20.37■□□□□ 0.85
SHANK1-203ENST00000391813 BTNL10A8MVZ5 291 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 MYO1DO94832 1006 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 RRP1BQ14684 758 aaKnown RBP20.36■□□□□ 0.85
SHANK1-203ENST00000391813 GPAT2Q6NUI2 795 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 MRIQ9BWK5 157 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 PCDHA3Q9Y5H8 950 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 HNRNPH3P31942 346 aaKnown RBP20.36■□□□□ 0.85
SHANK1-203ENST00000391813 GTF2H1P32780 548 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 CHN2P52757 468 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 TRIM63Q969Q1 353 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 EGFL8Q99944 293 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 NIF3L1Q9GZT8 377 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 PCDHGB4Q9UN71 923 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 GPD1P21695 349 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 BMP6P22004 513 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 TPI1P60174 286 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 RBBP7Q16576 425 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 WDR59Q6PJI9 974 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 NET1Q7Z628 596 aaPredicted RBP20.36■□□□□ 0.85
SHANK1-203ENST00000391813 SLC4A9Q96Q91 983 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 ATXN10Q9UBB4 475 aa20.36■□□□□ 0.85
SHANK1-203ENST00000391813 COPG1Q9Y678 874 aaKnown RBP20.36■□□□□ 0.85
SHANK1-203ENST00000391813 SLC37A4O43826 429 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 RAG1P15918 1043 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 TM4SF1P30408 202 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 LBRQ14739 615 aaKnown RBP20.35■□□□□ 0.85
SHANK1-203ENST00000391813 PKN1Q16512 942 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 TAF2Q6P1X5 1199 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 CAB39Q9Y376 341 aaPredicted RBP20.35■□□□□ 0.85
SHANK1-203ENST00000391813 RARAP10276 462 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 ZNF23P17027 643 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 MLH1P40692 756 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 CASP4P49662 377 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 ACOT2P49753 483 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 FAM83EQ2M2I3 478 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 CLEC10AQ8IUN9 316 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 TMEM139Q8IV31 216 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 ZCCHC7Q8N3Z6 543 aaKnown RBP20.35■□□□□ 0.85
SHANK1-203ENST00000391813 ELMO2Q96JJ3 720 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 C17orf75Q9HAS0 396 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 DISP2A7MBM2 1401 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 PRKCIP41743 596 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 NCALDP61601 193 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 TMC5Q6UXY8 1006 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 CLVS1Q8IUQ0 354 aaPredicted RBP20.35■□□□□ 0.85
SHANK1-203ENST00000391813 DLG3Q92796 817 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 KIAA1683Q9H0B3 1180 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 JMJD4Q9H9V9 463 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 MPP6Q9NZW5 540 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 DAPK2Q9UIK4 370 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 SLC39A10Q9ULF5 831 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 UBA6A0AVT1 1052 aaPredicted RBP20.35■□□□□ 0.85
SHANK1-203ENST00000391813 ICAM1P05362 532 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 PTK6Q13882 451 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 SMTNL2Q2TAL5 461 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 DACT2Q5SW24 774 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 SLC25A41Q8N5S1 370 aa20.35■□□□□ 0.85
SHANK1-203ENST00000391813 MED1Q15648 1581 aaPredicted RBP20.34■□□□□ 0.85
SHANK1-203ENST00000391813 KRT72Q14CN4 511 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 RDM1Q8NG50 284 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 TNIP3Q96KP6 325 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 EXOSC4Q9NPD3 245 aaKnown RBP20.34■□□□□ 0.85
SHANK1-203ENST00000391813 TMX2Q9Y320 296 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 A0A0U1RQJ8 604 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 EXTL3O43909 919 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 SERPINE1P05121 402 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 CPA3P15088 417 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 TFE3P19532 575 aaPredicted RBP20.34■□□□□ 0.85
SHANK1-203ENST00000391813 MMP13P45452 471 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 EPC2Q52LR7 807 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 ZNF556Q9HAH1 456 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 OLA1Q9NTK5 396 aaKnown RBP20.34■□□□□ 0.85
SHANK1-203ENST00000391813 DDX3XO00571 662 aaKnown RBP eCLIP20.34■□□□□ 0.85
SHANK1-203ENST00000391813 ATP1A4Q13733 1029 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 LAMC2Q13753 1193 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 GIT2Q14161 759 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 STX19Q8N4C7 294 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 SLC5A5Q92911 643 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 TRIM54Q9BYV2 358 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 ZNF518BQ9C0D4 1074 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 TBC1D12O60347 775 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 RRM1P23921 792 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 PTGER2P43116 358 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 CHRNB3Q05901 458 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 NME3Q13232 169 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 MXD4Q14582 209 aaPredicted RBP20.34■□□□□ 0.85
SHANK1-203ENST00000391813 NAPEPLDQ6IQ20 393 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 TAGAPQ8N103 731 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 PCYOX1Q9UHG3 505 aa20.34■□□□□ 0.85
SHANK1-203ENST00000391813 A0A087X0B3 334 aa20.33■□□□□ 0.85
SHANK1-203ENST00000391813 SDR42E2A6NKP2 422 aa20.33■□□□□ 0.85
SHANK1-203ENST00000391813 NFKBIAP25963 317 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms