RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 ESYT3A0FGR9 886 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 MYBPHLA2RUH7 354 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 C2CD4BA6NLJ0 364 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 F8VP50 259 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 PAPSS1O43252 624 aaPredicted RBP19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 LCP1P13796 627 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 RAG1P15918 1043 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 OGDHQ02218 1023 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 ZNF252P-AS1Q0IIN9 211 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 NFE2Q16621 373 aaPredicted RBP19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 LRRC26Q2I0M4 334 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 CLEC20AQ6ZU45 233 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 SCUBE3Q8IX30 993 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 CRIPAKQ8N1N5 446 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 RXFP2Q8WXD0 754 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 MYLPFQ96A32 169 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 LPIN3Q9BQK8 851 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 TRIM62Q9BVG3 475 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 PNPLA8Q9NP80 782 aa19.06■□□□□ 0.64
CCDC88C-203ENST00000389856 ZSCAN5CA6NGD5 496 aaPredicted RBP19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 TULP2O00295 520 aa19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 NRP1O14786 923 aa19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 KRT1P04264 644 aa19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 FAM153BP0C7A2 387 aa19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 IGFBP6P24592 240 aaPredicted RBP19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 ECHS1P30084 290 aa19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 PTPN9P43378 593 aa19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 TAS2R40P59535 323 aa19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 FAM153CQ494X1 144 aa19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 SPATA2LQ8IUW3 424 aaPredicted RBP19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 RIN2Q8WYP3 895 aaPredicted RBP19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 HINFPQ9BQA5 517 aa19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 DMAP1Q9NPF5 467 aaPredicted RBP19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 CNGB3Q9NQW8 809 aa19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 PRDM5Q9NQX1 630 aaPredicted RBP19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 DNAJB4Q9UDY4 337 aa19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 FAM153AQ9UHL3 310 aa19.05■□□□□ 0.64
CCDC88C-203ENST00000389856 OR6C75A6NL08 312 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 HMGB1P1B2RPK0 211 aaPredicted RBP19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 H7C4K7 107 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 PIK3R2O00459 728 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 CLDN5O00501 218 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 PHF2O75151 1096 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 LRCH4O75427 683 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 ITGB1P05556 798 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 GJC1P36383 396 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 HNRNPH2P55795 449 aaKnown RBP19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 MAP3K7CLP57077 242 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 KIAA0319Q5VV43 1072 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 ZNF280DQ6N043 979 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 PAQR9Q6ZVX9 377 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 EMC1Q8N766 993 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 TET1Q8NFU7 2136 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 RTP3Q9BQQ7 232 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 AMACRQ9UHK6 382 aa19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 FNDC1Q4ZHG4 1894 aaPredicted RBP19.04■□□□□ 0.64
CCDC88C-203ENST00000389856 GOLGA6L10A6NI86 522 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 FSCN2O14926 492 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 PRPSAP2O60256 369 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 BAIAP3O94812 1187 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 PTPN7P35236 360 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 DR1Q01658 176 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 ADIGQ0VDE8 80 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 SMARCB1Q12824 385 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 MFSD5Q6N075 450 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 CPNE8Q86YQ8 564 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 CSNK1G1Q9HCP0 422 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 PCYOX1Q9UHG3 505 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 FEZ2Q9UHY8 353 aaPredicted RBP19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 CENPFP49454 3210 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 B4GALT3O60512 393 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 DAB1O75553 588 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 TJP3O95049 919 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 SLC11A1P49279 550 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 ALDH7A1P49419 539 aaKnown RBP19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 MRPS5P82675 430 aaKnown RBP19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 CYP1B1Q16678 543 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 TCTN1Q2MV58 587 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 PIK3R5Q8WYR1 880 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 FUBP3Q96I24 572 aaKnown RBP eCLIP19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 TBCBQ99426 244 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 ERP44Q9BS26 406 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 OSBPL8Q9BZF1 889 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 PRKAG2Q9UGJ0 569 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 STAP1Q9ULZ2 295 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 EFR3BQ9Y2G0 817 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 LTBP2Q14767 1821 aa19.03■□□□□ 0.64
CCDC88C-203ENST00000389856 TTI1O43156 1089 aa19.02■□□□□ 0.64
CCDC88C-203ENST00000389856 TKTL1P51854 596 aa19.02■□□□□ 0.64
CCDC88C-203ENST00000389856 SLC25A11Q02978 314 aaKnown RBP19.02■□□□□ 0.64
CCDC88C-203ENST00000389856 BOLA3Q53S33 107 aa19.02■□□□□ 0.64
CCDC88C-203ENST00000389856 VARS2Q5ST30 1063 aaKnown RBP19.02■□□□□ 0.64
CCDC88C-203ENST00000389856 FAM171A1Q5VUB5 890 aa19.02■□□□□ 0.64
CCDC88C-203ENST00000389856 DUPD1Q68J44 220 aa19.02■□□□□ 0.64
CCDC88C-203ENST00000389856 FUT10Q6P4F1 479 aa19.02■□□□□ 0.64
CCDC88C-203ENST00000389856 OR10T2Q8NGX3 314 aa19.02■□□□□ 0.64
CCDC88C-203ENST00000389856 IRGQQ8WZA9 623 aa19.02■□□□□ 0.64
CCDC88C-203ENST00000389856 PKMYT1Q99640 499 aa19.02■□□□□ 0.64
CCDC88C-203ENST00000389856 ZCWPW1Q9H0M4 648 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms