RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CDH8P55286 799 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 FAM193AP78312 1265 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 GPC5P78333 572 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 FMO1Q01740 532 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 CDR2Q01850 454 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 STILQ15468 1287 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 SPOPLQ6IQ16 392 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 ANKRD54Q6NXT1 300 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 IFT20Q8IY31 132 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 RASGEF1CQ8N431 466 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 TATDN2Q93075 761 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 TMEM176AQ96HP8 235 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 IGFLR1Q9H665 355 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 CLDND1Q9NY35 253 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 CTTNBP2NLQ9P2B4 639 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 ASB3Q9Y575 518 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 TRIP11Q15643 1979 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 ADAM12O43184 909 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 XYLBO75191 536 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 HEXIM1O94992 359 aaKnown RBP10.74□□□□□ -0.69
VPS53-202ENST00000389040 MMEP08473 750 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 LMO2P25791 158 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 NDST1P52848 882 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 RPL10AP62906 217 aaKnown RBP10.74□□□□□ -0.69
VPS53-202ENST00000389040 DMTNQ08495 405 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 SLC39A12Q504Y0 691 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 CES5AQ6NT32 575 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 C11orf63Q6NUN7 778 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 OSTM1Q86WC4 334 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 SPATA2LQ8IUW3 424 aaPredicted RBP10.74□□□□□ -0.69
VPS53-202ENST00000389040 LEMD2Q8NC56 503 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 ELMO3Q96BJ8 720 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 MSLNLQ96KJ4 702 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 GDAP1L1Q96MZ0 367 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 NECTIN4Q96NY8 510 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 ELOVL4Q9GZR5 314 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 ADAM7Q9H2U9 754 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 GDF3Q9NR23 364 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 MAN1C1Q9NR34 630 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 GTF3C4Q9UKN8 822 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 HPCAL4Q9UM19 191 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 MTMR11A4FU01 709 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 PRRG1O14668 218 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 DDX3YO15523 660 aaKnown RBP10.73□□□□□ -0.69
VPS53-202ENST00000389040 MTA2O94776 668 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 GLP2RO95838 553 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 GLI1P08151 1106 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 PDGFRBP09619 1106 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 KRT5P13647 590 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 ACO1P21399 889 aaKnown RBP10.73□□□□□ -0.69
VPS53-202ENST00000389040 ALDH1A3P47895 512 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 BPIFB4P59827 614 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 ADCY1Q08828 1119 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 SKIV2LQ15477 1246 aaKnown RBP10.73□□□□□ -0.69
VPS53-202ENST00000389040 HSP90B2PQ58FF3 399 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 PPM1LQ5SGD2 360 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 EMBQ6PCB8 327 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 RNF19BQ6ZMZ0 732 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 LRRTM3Q86VH5 581 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 KLHL7Q8IXQ5 586 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 UBR7Q8N806 425 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 DDX1Q92499 740 aaKnown RBP10.73□□□□□ -0.69
VPS53-202ENST00000389040 HNRNPABQ99729 332 aaKnown RBP10.73□□□□□ -0.69
VPS53-202ENST00000389040 SDCBP2Q9H190 292 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 UBE2ZQ9H832 354 aaPredicted RBP10.73□□□□□ -0.69
VPS53-202ENST00000389040 CYP4F11Q9HBI6 524 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 MED4Q9NPJ6 270 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 CLEC1BQ9P126 229 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 TTC7AQ9ULT0 858 aaPredicted RBP10.73□□□□□ -0.69
VPS53-202ENST00000389040 PLXNA4Q9HCM2 1894 aa10.73□□□□□ -0.69
VPS53-202ENST00000389040 MYBPHLA2RUH7 354 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 CCDC188H7C350 402 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 KRIT1O00522 736 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 TRIM66O15016 1216 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 RAD51CO43502 376 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 FGF19O95750 216 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 C8AP07357 584 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 EPCAMP16422 314 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 LTBRP36941 435 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 ARPP19P56211 112 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 GUCY2DQ02846 1103 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 CCDC85BQ15834 202 aaPredicted RBP10.72□□□□□ -0.69
VPS53-202ENST00000389040 LEXMQ3ZCV2 418 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 ARHGAP17Q68EM7 881 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 SCARA5Q6ZMJ2 495 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 ITIH5Q86UX2 942 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 ELMOD1Q8N336 334 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 SMRP1Q8NCR6 262 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 VN1R2Q8NFZ6 395 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 WHAMMQ8TF30 809 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 ATXN2LQ8WWM7 1075 aaKnown RBP10.72□□□□□ -0.69
VPS53-202ENST00000389040 RIPOR3Q96MK2 946 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 AP1M1Q9BXS5 423 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 PRKD2Q9BZL6 878 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 CARD9Q9H257 536 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 AVENQ9NQS1 362 aaPredicted RBP10.72□□□□□ -0.69
VPS53-202ENST00000389040 COL4A4P53420 1690 aaPredicted RBP10.72□□□□□ -0.69
VPS53-202ENST00000389040 MICAL2O94851 1124 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 CSPG5O95196 566 aa10.72□□□□□ -0.69
VPS53-202ENST00000389040 LRG1P02750 347 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms