RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 ILF2Q12905 390 aaKnown RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 DPYSL2Q16555 572 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 PTPROQ16827 1216 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 INTS6LQ5JSJ4 861 aaKnown RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 EFHC2Q5JST6 749 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 KCTD16Q68DU8 428 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 SLC9A4Q6AI14 798 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 ZNF449Q6P9G9 518 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 OLFML1Q6UWY5 402 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 DLK2Q6UY11 383 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 SCARA5Q6ZMJ2 495 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 MRPL10Q7Z7H8 261 aaKnown RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 NLRP14Q86W24 1093 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 CDKL3Q8IVW4 592 aaPredicted RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 ZNF454Q8N9F8 522 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 ATP11CQ8NB49 1132 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 MCUQ8NE86 351 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 ATXN2LQ8WWM7 1075 aaKnown RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 PPM1EQ8WY54 764 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 IRGQQ8WZA9 623 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 FAF2Q96CS3 445 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 CHMP6Q96FZ7 201 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 CPB2Q96IY4 423 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 RNF157Q96PX1 679 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 CCT8L2Q96SF2 557 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 NAT9Q9BTE0 207 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 DDX23Q9BUQ8 820 aaKnown RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 CENPHQ9H3R5 247 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 SMYD3Q9H7B4 428 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 ACTR5Q9H9F9 607 aaPredicted RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 INTS9Q9NV88 658 aaKnown RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 SNTG2Q9NY99 539 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 DONSONQ9NYP3 566 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 BCCIPQ9P287 314 aaKnown RBP eCLIP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 DNPEPQ9ULA0 475 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 POLIQ9UNA4 740 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 PIN4Q9Y237 131 aaKnown RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 TRPV2Q9Y5S1 764 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 GOLGA6L7A0A1B0GV03 622 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 SGK1O00141 431 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 GABRDO14764 452 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 APOL1O14791 398 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 TP73O15350 636 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 SEPT4O43236 478 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 RECQL4O94761 1208 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 STK10O94804 968 aaKnown RBP9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 GJB1P08034 283 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 CFHP08603 1231 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 GBP2P32456 591 aaPredicted RBP9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 NOS2P35228 1153 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 FLT3P36888 993 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 MATKP42679 507 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 GYS2P54840 703 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 CDH8P55286 799 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 MRPS6P82932 125 aaKnown RBP9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 ROR1Q01973 937 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 GPS1Q13098 491 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 AUHQ13825 339 aaKnown RBP9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 KRT81Q14533 505 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 ITIH4Q14624 930 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 NOMO1Q15155 1222 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 HIF1AQ16665 826 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 GOLGA7BQ2TAP0 167 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 SLC25A52Q3SY17 297 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 RNASEH2BQ5TBB1 312 aaKnown RBP9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 OR6B2Q6IFH4 312 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 AADACL2Q6P093 401 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 CPLX4Q7Z7G2 160 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 SRLQ86TD4 932 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 SAPCD2Q86UD0 394 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 TMEM192Q8IY95 271 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 OR6B3Q8NGW1 331 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 RXFP2Q8WXD0 754 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 RAPGEF5Q92565 580 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 PGAP3Q96FM1 320 aaPredicted RBP9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 HEMGNQ9BXL5 484 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 CFHR5Q9BXR6 569 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 DUSP16Q9BY84 665 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 OXCT2Q9BYC2 517 aaPredicted RBP9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 TRIM7Q9C029 511 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 KLC2Q9H0B6 622 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 SDCBP2Q9H190 292 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 R3HDMLQ9H3Y0 253 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 CNGB3Q9NQW8 809 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 METTL5Q9NRN9 209 aaKnown RBP9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 NKIRAS1Q9NYS0 192 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 CDH9Q9ULB4 789 aa9.1□□□□□ -0.95
SNRNP40-202ENST00000373720 CITO14578 2027 aa9.09□□□□□ -0.95
SNRNP40-202ENST00000373720 ERICH4A6NGS2 130 aa9.09□□□□□ -0.95
SNRNP40-202ENST00000373720 C9IYK1 514 aa9.09□□□□□ -0.95
SNRNP40-202ENST00000373720 KBTBD13C9JR72 458 aa9.09□□□□□ -0.95
SNRNP40-202ENST00000373720 GOLGA8SH3BPF8 625 aa9.09□□□□□ -0.95
SNRNP40-202ENST00000373720 INPPL1O15357 1258 aa9.09□□□□□ -0.95
SNRNP40-202ENST00000373720 MEFVO15553 781 aaPredicted RBP9.09□□□□□ -0.95
SNRNP40-202ENST00000373720 PRPF4O43172 522 aaKnown RBP eCLIP9.09□□□□□ -0.95
SNRNP40-202ENST00000373720 GCATO75600 419 aa9.09□□□□□ -0.95
SNRNP40-202ENST00000373720 THP07101 528 aa9.09□□□□□ -0.95
SNRNP40-202ENST00000373720 RBP3P10745 1247 aa9.09□□□□□ -0.95
SNRNP40-202ENST00000373720 RARBP10826 455 aa9.09□□□□□ -0.95
SNRNP40-202ENST00000373720 MLNP12872 115 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms