RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ST8SIA6P61647 398 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 ARHGEF7Q14155 803 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 MGAT5BQ3V5L5 792 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 PRAMEF18Q5VWM3 479 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 MPZL3Q6UWV2 235 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 SYT17Q9BSW7 474 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 PCDH9Q9HC56 1237 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 CISHQ9NSE2 258 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.82□□□□□ -0.52
PTPRF-203ENST00000372407 AAR2Q9Y312 384 aaKnown RBP11.82□□□□□ -0.52
PTPRF-203ENST00000372407 AHDC1Q5TGY3 1603 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-203ENST00000372407 LRRC10BA6NIK2 292 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 SUPT20HL2P0C7V6 817 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 SERPINB8P50452 374 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 AQP5P55064 265 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 C1QBPQ07021 282 aaKnown RBP11.82□□□□□ -0.52
PTPRF-203ENST00000372407 CYP24A1Q07973 514 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 GTF2H3Q13889 308 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 ACOT1Q86TX2 421 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 SLC47A2Q86VL8 602 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 DDI1Q8WTU0 396 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 SLC5A5Q92911 643 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 DUSP9Q99956 384 aaKnown RBP11.82□□□□□ -0.52
PTPRF-203ENST00000372407 BRD8Q9H0E9 1235 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 EHD4Q9H223 541 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 SLCO1B7G3V0H7 640 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 TM9SF1O15321 606 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 PTPN4P29074 926 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 TTLL9Q3SXZ7 439 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 ZRANB3Q5FWF4 1079 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 MTDHQ86UE4 582 aaKnown RBP11.82□□□□□ -0.52
PTPRF-203ENST00000372407 GPRC5AQ8NFJ5 357 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 TNIP2Q8NFZ5 429 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 FAM172AQ8WUF8 416 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 POP1Q99575 1024 aaKnown RBP11.82□□□□□ -0.52
PTPRF-203ENST00000372407 SEPT5Q99719 369 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-203ENST00000372407 RXFP1Q9HBX9 757 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 PAIP2BQ9ULR5 123 aaKnown RBP11.82□□□□□ -0.52
PTPRF-203ENST00000372407 TMX2Q9Y320 296 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 ZSCAN5CA6NGD5 496 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-203ENST00000372407 H2AFYO75367 372 aaKnown RBP11.81□□□□□ -0.52
PTPRF-203ENST00000372407 PSMA4P25789 261 aaKnown RBP11.81□□□□□ -0.52
PTPRF-203ENST00000372407 RAP1GDS1P52306 607 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 DEFA1P59665 94 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 DEFA3P59666 94 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 ST3GAL1Q11201 340 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 SGO1Q5FBB7 561 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 SEL1L3Q68CR1 1132 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 DENND5BQ6ZUT9 1274 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 UNC45BQ8IWX7 931 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 BBS7Q8IWZ6 715 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 ABRAQ8N0Z2 381 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 PRMT6Q96LA8 375 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-203ENST00000372407 PARK7Q99497 189 aaKnown RBP11.81□□□□□ -0.52
PTPRF-203ENST00000372407 THUMPD3Q9BV44 507 aaKnown RBP11.81□□□□□ -0.52
PTPRF-203ENST00000372407 RTFDC1Q9BY42 306 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-203ENST00000372407 CYP3A43Q9HB55 503 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 RRAGCQ9HB90 399 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 USP18Q9UMW8 372 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 DNAJC16Q9Y2G8 782 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 ACOT9Q9Y305 439 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 KANSL1LA0AUZ9 987 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 CES2O00748 559 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 EFCAB14O75071 495 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 HARS2P49590 506 aaKnown RBP11.81□□□□□ -0.52
PTPRF-203ENST00000372407 NUP107P57740 925 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 PTPN11Q06124 597 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-203ENST00000372407 RASA2Q15283 850 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 ADRM1Q16186 407 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 CLEC16AQ2KHT3 1053 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 C3orf67Q6ZVT6 689 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 SLC35C1Q96A29 364 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 AKT1S1Q96B36 256 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 PLEKHA8Q96JA3 519 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 TRPC7Q9HCX4 862 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 CHST12Q9NRB3 414 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 MON2Q7Z3U7 1717 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 FKBP6O75344 327 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 AP1G2O75843 785 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 CYP2B6P20813 491 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 ETFBP38117 255 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 ERVK-9P63128 1117 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 TRIM60Q495X7 471 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 DEPDC1Q5TB30 811 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 BNC2Q6ZN30 1099 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-203ENST00000372407 ADCK2Q7Z695 626 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 APBB2Q92870 758 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 C17orf80Q9BSJ5 609 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 UBE2OQ9C0C9 1292 aaKnown RBP11.81□□□□□ -0.52
PTPRF-203ENST00000372407 APPL1Q9UKG1 709 aa11.81□□□□□ -0.52
PTPRF-203ENST00000372407 PIK3CDO00329 1044 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 B3GAT3O94766 335 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 GHRP10912 638 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 CPA3P15088 417 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 CLCN3P51790 818 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 BCAT1P54687 386 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 GNASQ5JWF2 1037 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 GLRA4Q5JXX5 417 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 C10orf120Q5SQS8 335 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 SLFN11Q7Z7L1 901 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms