RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 RHOXF2BP0C7M4 288 aa24.28■■□□□ 1.48
SDF4-202ENST00000360001 DAOAP59103 153 aa24.28■■□□□ 1.48
SDF4-202ENST00000360001 ATP11AP98196 1134 aa24.28■■□□□ 1.48
SDF4-202ENST00000360001 ADAT2Q7Z6V5 191 aaKnown RBP24.28■■□□□ 1.48
SDF4-202ENST00000360001 ZNF558Q96NG5 402 aa24.28■■□□□ 1.48
SDF4-202ENST00000360001 RHOXF2Q9BQY4 288 aa24.28■■□□□ 1.48
SDF4-202ENST00000360001 DDX23Q9BUQ8 820 aaKnown RBP24.28■■□□□ 1.48
SDF4-202ENST00000360001 KLHL11Q9NVR0 708 aa24.28■■□□□ 1.48
SDF4-202ENST00000360001 ZBBXA8MT70 800 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 H7C4K7 107 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 ZRANB2O95218 330 aaKnown RBP eCLIP24.27■■□□□ 1.48
SDF4-202ENST00000360001 PTPN9P43378 593 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 HADHQ16836 314 aaKnown RBP24.27■■□□□ 1.48
SDF4-202ENST00000360001 CDO1Q16878 200 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 ZDHHC14Q8IZN3 488 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 SLC39A11Q8N1S5 342 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 FAM149B1Q96BN6 582 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 YME1L1Q96TA2 773 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 TCRBV7S2A1N4TA0A589 114 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 DAB1O75553 588 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 GLI1P08151 1106 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 USP17L7P0C7H9 530 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 TFE3P19532 575 aaPredicted RBP24.27■■□□□ 1.48
SDF4-202ENST00000360001 YWHAZP63104 245 aaKnown RBP24.27■■□□□ 1.48
SDF4-202ENST00000360001 USP41Q3LFD5 358 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 TMEM240Q5SV17 173 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 PRSS55Q6UWB4 352 aaPredicted RBP24.27■■□□□ 1.48
SDF4-202ENST00000360001 BHLHA9Q7RTU4 235 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 FAM172AQ8WUF8 416 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 HERPUD2Q9BSE4 406 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 ADAM33Q9BZ11 813 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 ZWILCHQ9H900 591 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 DDX56Q9NY93 547 aaKnown RBP24.27■■□□□ 1.48
SDF4-202ENST00000360001 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP24.27■■□□□ 1.481e-6■■■□□ 14.8
SDF4-202ENST00000360001 PCSK1NQ9UHG2 260 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 USP18Q9UMW8 372 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 PCDHB5Q9Y5E4 795 aa24.27■■□□□ 1.48
SDF4-202ENST00000360001 CCDC188H7C350 402 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 ZBED1O96006 694 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 KRT7P08729 469 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 LAG3P18627 525 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 GRIK1P39086 918 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 MATKP42679 507 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 HFE2Q6ZVN8 426 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 CYP4V2Q6ZWL3 525 aaPredicted RBP24.26■■□□□ 1.47
SDF4-202ENST00000360001 ANKS1BQ7Z6G8 1248 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 RCOR2Q8IZ40 523 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 COLGALT1Q8NBJ5 622 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 ANKRD7Q92527 254 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 CENPIQ92674 756 aaPredicted RBP24.26■■□□□ 1.47
SDF4-202ENST00000360001 ACSF2Q96CM8 615 aaPredicted RBP24.26■■□□□ 1.47
SDF4-202ENST00000360001 PGLYRP2Q96PD5 576 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 SLC2A13Q96QE2 648 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 PEBP4Q96S96 227 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 KRT12Q99456 494 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 LRRC1Q9BTT6 524 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 OXCT2Q9BYC2 517 aaPredicted RBP24.26■■□□□ 1.47
SDF4-202ENST00000360001 CHST7Q9NS84 486 aa24.26■■□□□ 1.47
SDF4-202ENST00000360001 YJEFN3A6XGL0 299 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 E7ENQ6 273 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 PI4K2BG5E9Z4 385 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 FSCN2O14926 492 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 SART1O43290 800 aaKnown RBP24.25■■□□□ 1.47
SDF4-202ENST00000360001 TRUB2O95900 331 aaKnown RBP24.25■■□□□ 1.47
SDF4-202ENST00000360001 KRT1P04264 644 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 GPR17Q13304 367 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 LLGL1Q15334 1064 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 SMTNL2Q2TAL5 461 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 PM20D1Q6GTS8 502 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 CCDC50Q8IVM0 306 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 DEFB106AQ8N104 65 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 RAPGEF5Q92565 580 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 RNF25Q96BH1 459 aaPredicted RBP24.25■■□□□ 1.47
SDF4-202ENST00000360001 RBM41Q96IZ5 413 aaKnown RBP24.25■■□□□ 1.47
SDF4-202ENST00000360001 SLITRK1Q96PX8 696 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 NGRNQ9NPE2 291 aaKnown RBP24.25■■□□□ 1.47
SDF4-202ENST00000360001 CXXC1Q9P0U4 656 aaPredicted RBP24.25■■□□□ 1.47
SDF4-202ENST00000360001 USP3Q9Y6I4 520 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 TNFRSF10BO14763 440 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 GJB5O95377 273 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 CPB1P15086 417 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 ARPP19P56211 112 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 HDAC4P56524 1084 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 SIX1Q15475 284 aaPredicted RBP24.25■■□□□ 1.47
SDF4-202ENST00000360001 KCNT1Q5JUK3 1230 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 VSTM1Q6UX27 236 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 SCML4Q8N228 414 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 ATAD1Q8NBU5 361 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 POPDC2Q9HBU9 364 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 MTRRQ9UBK8 725 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 KIAA1671Q9BY89 1806 aa24.25■■□□□ 1.47
SDF4-202ENST00000360001 FYNP06241 537 aa24.24■■□□□ 1.47
SDF4-202ENST00000360001 RALAP11233 206 aa24.24■■□□□ 1.47
SDF4-202ENST00000360001 MAGEA11P43364 429 aa24.24■■□□□ 1.47
SDF4-202ENST00000360001 HTRA4P83105 476 aaPredicted RBP24.24■■□□□ 1.47
SDF4-202ENST00000360001 SMC1AQ14683 1233 aaKnown RBP24.24■■□□□ 1.47
SDF4-202ENST00000360001 MFSD7Q6UXD7 560 aa24.24■■□□□ 1.47
SDF4-202ENST00000360001 KLHL7Q8IXQ5 586 aa24.24■■□□□ 1.47
SDF4-202ENST00000360001 PIK3R5Q8WYR1 880 aa24.24■■□□□ 1.47
SDF4-202ENST00000360001 PNKPQ96T60 521 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms