RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ZNF720Q7Z2F6 126 aa20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 ZCCHC7Q8N3Z6 543 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 LMCD1Q9NZU5 365 aa20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 DAPK2Q9UIK4 370 aa20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 RUVBL2Q9Y230 463 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 PRR23D1E9PI22 279 aaPredicted RBP20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 PRR23D2P0DMB1 279 aaPredicted RBP20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 PTK6Q13882 451 aa20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 EFL1Q7Z2Z2 1120 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 ZNF280CQ8ND82 737 aa20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 KDM6AO15550 1401 aaPredicted RBP20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 RRP1BQ14684 758 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 SGO1Q5FBB7 561 aa20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 AGAP9Q5VTM2 703 aa20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 SLC35C1Q96A29 364 aa20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 GRIP2Q9C0E4 1043 aa20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 NEUROG2Q9H2A3 272 aa20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 CYP4F12Q9HCS2 524 aa20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 WBP4O75554 376 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 AMPD2Q01433 879 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 AGKQ53H12 422 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 OTUB1Q96FW1 271 aaPredicted RBP20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 AGBL1Q96MI9 1066 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 MMADHCQ9H3L0 296 aaPredicted RBP20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 DNAJC18Q9H819 358 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 IMPAD1Q9NX62 359 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 CORO1CQ9ULV4 474 aaPredicted RBP20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 SIK3Q9Y2K2 1263 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 PCDHA3Q9Y5H8 950 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 CLASP2O75122 1294 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 PROCP04070 461 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 CNTFP26441 200 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 CCDC142Q17RM4 750 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 SEZ6Q53EL9 994 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 TDRD5Q8NAT2 981 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 ZSWIM2Q8NEG5 633 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 OR6Y1Q8NGX8 325 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 APOPT1Q96IL0 206 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 MMTAG2Q9BU76 263 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 IQCA1LA6NCM1 817 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 SLCO1B7G3V0H7 640 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 H2AFYO75367 372 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 DDR1Q08345 913 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 TBCELQ5QJ74 424 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 APPL2Q8NEU8 664 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 SLC7A14Q8TBB6 771 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 RPAP3Q9H6T3 665 aaPredicted RBP20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 THAP1Q9NVV9 213 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 PKP3Q9Y446 797 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 RASSF9O75901 435 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 DCAF4L1Q3SXM0 396 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 DPY19L2Q6NUT2 758 aa20.17■□□□□ 0.82
CCDC88B-202ENST00000356786 HIST1H2AGP0C0S8 130 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 HIST1H2ADP20671 130 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 KRR1Q13601 381 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 STRA8Q7Z7C7 330 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 TNIP2Q8NFZ5 429 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 HIST1H2AHQ96KK5 128 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 HIST1H2AJQ99878 128 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 H2AFJQ9BTM1 129 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 CNGB3Q9NQW8 809 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 MYRFQ9Y2G1 1151 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 FAM237AA0A1B0GTK4 181 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 PMPCBO75439 489 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 MT-CO1P00395 513 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 OCM2P0CE71 109 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 OCMP0CE72 109 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 C21orf59P57076 290 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 N4BP2L1Q5TBK1 243 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 TTC23LQ6PF05 361 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 TRIM69Q86WT6 500 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 TTLL6Q8N841 843 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 ZNF483Q8TF39 744 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 WDR60Q8WVS4 1066 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 CHST7Q9NS84 486 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 GPATCH2LQ9NWQ4 482 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 CAB39Q9Y376 341 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 STARD13Q9Y3M8 1113 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 RNF103O00237 685 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 SERPINE1P05121 402 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 CLEC16AQ2KHT3 1053 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 BNIPLQ7Z465 357 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 NRDE2Q9H7Z3 1164 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 LRRC40Q9H9A6 602 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 CLIC5Q9NZA1 410 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 NCKIPSDQ9NZQ3 722 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 HEATR9A2RTY3 570 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 CLOCKO15516 846 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 DCXO43602 365 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 SLC1A6P48664 564 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 DGKDQ16760 1214 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 GOLGA7BQ2TAP0 167 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 B3GNT6Q6ZMB0 384 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 SV2AQ7L0J3 742 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 EMC1Q8N766 993 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 SPIRE2Q8WWL2 714 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 MTERF3Q96E29 417 aa20.16■□□□□ 0.82
CCDC88B-202ENST00000356786 ZC3H11AO75152 810 aaKnown RBP eCLIP20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 KRT36O76013 467 aa20.15■□□□□ 0.82
CCDC88B-202ENST00000356786 CSTF3Q12996 717 aaKnown RBP20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms