RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ZNF568Q3ZCX4 644 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 MDH1BQ5I0G3 518 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 NEK5Q6P3R8 708 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 FAM149B1Q96BN6 582 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 EAF2Q96CJ1 260 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-203ENST00000353578 SPATA16Q9BXB7 569 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 INTS2Q9H0H0 1204 aaKnown RBP13.01□□□□□ -0.33
COL6A3-203ENST00000353578 CDH9Q9ULB4 789 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 ATP10BO94823 1461 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13□□□□□ -0.33
COL6A3-203ENST00000353578 EPN2O95208 641 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 WEE2P0C1S8 567 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 S100A12P80511 92 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 MAPK6Q16659 721 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 FBXO42Q6P3S6 717 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 PI16Q6UXB8 463 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 RBM44Q6ZP01 1051 aaKnown RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 BNIPLQ7Z465 357 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 TRNAU1APQ9NX07 287 aaKnown RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 LEMD3Q9Y2U8 911 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 A0A0X1KG70 313 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 GNPATO15228 680 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 CTSWP56202 376 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 CDH18Q13634 790 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 ZNF699Q32M78 642 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 LACTB2Q53H82 288 aaPredicted RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 ACOT12Q8WYK0 555 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 ZC3H10Q96K80 434 aaKnown RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 EGFL8Q99944 293 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 CDH19Q9H159 772 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 P4HBP07237 508 aaKnown RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 DPYDQ12882 1025 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 SUCLG2Q96I99 432 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 FBXO9Q9UK97 447 aaPredicted RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 SIN3BO75182 1162 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 ZNF806P0C7X5 589 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 MYCLP12524 364 aaPredicted RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 MSLNQ13421 630 aaPredicted RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 ZNF57Q68EA5 555 aaPredicted RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 PLET1Q6UQ28 207 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 CCDC28AQ8IWP9 274 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 EIF5AP63241 154 aaKnown RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 MXD4Q14582 209 aaPredicted RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 TBCELQ5QJ74 424 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 ADCY4Q8NFM4 1077 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 VAMP7P51809 220 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 PLIN5Q00G26 463 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 GPKOWQ92917 476 aaPredicted RBP eCLIP13□□□□□ -0.33
COL6A3-203ENST00000353578 ERICH5Q6P6B1 374 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 TMEM26Q6ZUK4 368 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 L3MBTL3Q96JM7 780 aaPredicted RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 PEX16Q9Y5Y5 336 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 CHP2O43745 196 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 PRMT3O60678 531 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 PFKFB3Q16875 520 aaPredicted RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 LIN52Q52LA3 116 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 JARID2Q92833 1246 aaPredicted RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 C12orf4Q9NQ89 552 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 TAS2R1Q9NYW7 299 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 SEPT9Q9UHD8 586 aaPredicted RBP13□□□□□ -0.33
COL6A3-203ENST00000353578 GTF3C4Q9UKN8 822 aa13□□□□□ -0.33
COL6A3-203ENST00000353578 NOL4O94818 638 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 MPOP05164 745 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 CYP2D6P10635 497 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 GNL1P36915 607 aaPredicted RBP12.99□□□□□ -0.33
COL6A3-203ENST00000353578 TIMM10P62072 90 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 CYP2U1Q7Z449 544 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 C11orf74Q86VG3 221 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 SGF29Q96ES7 293 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 C12orf66Q96MD2 445 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 GDF3Q9NR23 364 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 NUDT5Q9UKK9 219 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 OVOS2A0A0G2JMS6 1433 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 TLR2O60603 784 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 AKT1P31749 480 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 SFNP31947 248 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 ALX1Q15699 326 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 NEDD8Q15843 81 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 FAM47AQ5JRC9 791 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 CASP12Q6UXS9 341 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 CDC26Q8NHZ8 85 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 RIN2Q8WYP3 895 aaPredicted RBP12.99□□□□□ -0.33
COL6A3-203ENST00000353578 HEY1Q9Y5J3 304 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 IQGAP3Q86VI3 1631 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 CLDN25C9JDP6 229 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 TFAMQ00059 246 aaKnown RBP12.99□□□□□ -0.33
COL6A3-203ENST00000353578 ZNF284Q2VY69 593 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 LAYNQ6UX15 382 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 TMC4Q7Z404 712 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 AS3MTQ9HBK9 375 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 INTS13Q9NVM9 706 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 NOD1Q9Y239 953 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 NEDD4P46934 1319 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 ZNF185O15231 689 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 DNAJB2P25686 324 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 ZAP70P43403 619 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 PLCL1Q15111 1095 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 PKD2L1Q9P0L9 805 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 COQ6Q9Y2Z9 468 aa12.99□□□□□ -0.33
COL6A3-203ENST00000353578 EPHB2P29323 1055 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms