RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 MINDY3Q9H8M7 445 aa12.43□□□□□ -0.42
USP1-201ENST00000339950 NKX1-2Q9UD57 310 aaPredicted RBP12.43□□□□□ -0.42
USP1-201ENST00000339950 CCDC130P13994 396 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 OSBPP22059 807 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 POU5F1BQ06416 359 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 TMED1Q13445 227 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 TMEM154Q6P9G4 183 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 ZC3H3Q8IXZ2 948 aaKnown RBP12.42□□□□□ -0.42
USP1-201ENST00000339950 AGBL3Q8NEM8 1001 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 TMPRSS4Q9NRS4 437 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 SETD4Q9NVD3 440 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 SNTG2Q9NY99 539 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 CHKBQ9Y259 395 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 ANKRD12Q6UB98 2062 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 CNTNAP1P78357 1384 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 hCG_1818297A0A087WSY0 165 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 TMEM191CA6NGB0 347 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 SPDYE16A6NNV3 312 aaPredicted RBP12.42□□□□□ -0.42
USP1-201ENST00000339950 APOL1O14791 398 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 USP1O94782 785 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 ERBB2P04626 1255 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 MMP8P22894 467 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 KDELR1P24390 212 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 ARPP19P56211 112 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 SIX1Q15475 284 aaPredicted RBP12.42□□□□□ -0.42
USP1-201ENST00000339950 KLHL38Q2WGJ6 581 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 PRAMEF19Q5SWL8 479 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 ABHD15Q6UXT9 468 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 SPATA6LQ8N4H0 392 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 ZCCHC9Q8N567 271 aaKnown RBP12.42□□□□□ -0.42
USP1-201ENST00000339950 C15orf41Q9Y2V0 281 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 PPP1R12AO14974 1030 aaPredicted RBP12.42□□□□□ -0.42
USP1-201ENST00000339950 SLC26A4O43511 780 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 TGFB2P61812 414 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 MTFR1Q15390 333 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 RABGAP1LQ5R372 815 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 PIGWQ7Z7B1 504 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 FAM83AQ86UY5 434 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 SAMD3Q8N6K7 520 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 CENPTQ96BT3 561 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 RNPEPQ9H4A4 650 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 ARL8BQ9NVJ2 186 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 MCM8Q9UJA3 840 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 STRIP2Q9ULQ0 834 aa12.42□□□□□ -0.42
USP1-201ENST00000339950 PIN4Q9Y237 131 aaKnown RBP12.42□□□□□ -0.42
USP1-201ENST00000339950 GPD1P21695 349 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 FOXD4Q12950 439 aaPredicted RBP12.41□□□□□ -0.42
USP1-201ENST00000339950 TFDP2Q14188 446 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 TWF2Q6IBS0 349 aaKnown RBP12.41□□□□□ -0.42
USP1-201ENST00000339950 LGMNQ99538 433 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 FERMT1Q9BQL6 677 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 CCDC88AQ3V6T2 1871 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 BCORQ6W2J9 1755 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 PLCH1Q4KWH8 1693 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 C5orf60A6NFR6 353 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 AIM2O14862 343 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 ATP4AP20648 1035 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 SLC8A3P57103 927 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 LAYNQ6UX15 382 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 TNS4Q8IZW8 715 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 PYROXD2Q8N2H3 581 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 CLEC4CQ8WTT0 213 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 SEC14L1Q92503 715 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 ATP2A3Q93084 1043 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 CELF6Q96J87 481 aaKnown RBP12.41□□□□□ -0.42
USP1-201ENST00000339950 COL14A1Q05707 1796 aaKnown RBP12.41□□□□□ -0.42
USP1-201ENST00000339950 A0A0B4J269 797 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 CCND1P24385 295 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 BTKQ06187 659 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 C1QBPQ07021 282 aaKnown RBP12.41□□□□□ -0.42
USP1-201ENST00000339950 CUL3Q13618 768 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 VGLL4Q14135 290 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 DPYSL3Q14195 570 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 CRYMQ14894 314 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.41□□□□□ -0.42
USP1-201ENST00000339950 HABP4Q5JVS0 413 aaKnown RBP12.41□□□□□ -0.42
USP1-201ENST00000339950 TRMT10BQ6PF06 316 aaKnown RBP12.41□□□□□ -0.42
USP1-201ENST00000339950 IGDCC3Q8IVU1 814 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 SPNS2Q8IVW8 549 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 KATNAL2Q8IYT4 538 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 CPT1BQ92523 772 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 EDEM1Q92611 657 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 SRPK1Q96SB4 655 aaKnown RBP12.41□□□□□ -0.42
USP1-201ENST00000339950 BTBD7Q9P203 1132 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 ARHGAP28Q9P2N2 729 aa12.41□□□□□ -0.42
USP1-201ENST00000339950 ZNF214Q9UL59 606 aaPredicted RBP12.41□□□□□ -0.42
USP1-201ENST00000339950 KNL1Q8NG31 2342 aa12.4□□□□□ -0.42
USP1-201ENST00000339950 E9PBE3 544 aa12.4□□□□□ -0.42
USP1-201ENST00000339950 GPR25O00155 361 aa12.4□□□□□ -0.42
USP1-201ENST00000339950 FCHO1O14526 889 aa12.4□□□□□ -0.42
USP1-201ENST00000339950 KLHL41O60662 606 aa12.4□□□□□ -0.42
USP1-201ENST00000339950 ARIH2O95376 493 aa12.4□□□□□ -0.42
USP1-201ENST00000339950 PAEPP09466 180 aa12.4□□□□□ -0.42
USP1-201ENST00000339950 GBE1Q04446 702 aa12.4□□□□□ -0.42
USP1-201ENST00000339950 UBAP2LQ14157 1087 aaKnown RBP12.4□□□□□ -0.42
USP1-201ENST00000339950 MYBPC2Q14324 1141 aa12.4□□□□□ -0.42
USP1-201ENST00000339950 RASA2Q15283 850 aa12.4□□□□□ -0.42
USP1-201ENST00000339950 DSTYKQ6XUX3 929 aa12.4□□□□□ -0.42
USP1-201ENST00000339950 BRSK2Q8IWQ3 736 aa12.4□□□□□ -0.42
USP1-201ENST00000339950 ALLCQ8N6M5 410 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms