RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 NLRP10Q86W26 655 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 SYT2Q8N9I0 419 aaPredicted RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 DDHD1Q8NEL9 900 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 CNPPD1Q9BV87 410 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 WNT8AQ9H1J5 351 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 ABHD16BQ9H3Z7 469 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 NOL11Q9H8H0 719 aaKnown RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 KRT84Q9NSB2 600 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 TNFSF13BQ9Y275 285 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 MRPS23Q9Y3D9 190 aaKnown RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 PHF20L1A8MW92 1017 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 NR2C1P13056 603 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 RBMS1P29558 406 aaKnown RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 GUCA1AP43080 201 aaPredicted RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 THOP1P52888 689 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 NAB1Q13506 487 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 ARHGEF7Q14155 803 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 HIC1Q14526 733 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 ACAP2Q15057 778 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 GSTA3Q16772 222 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 BHLHB9Q6PI77 547 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 TRPM8Q7Z2W7 1104 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 BRSK2Q8IWQ3 736 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 PARP8Q8N3A8 854 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 ZNF558Q96NG5 402 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 SPATA16Q9BXB7 569 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 RWDD2AQ9UIY3 292 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 DNPEPQ9ULA0 475 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 LRRC37AA6NMS7 1700 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 FRMPD3Q5JV73 1810 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 LIN7AO14910 233 aaPredicted RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 SMNDC1O75940 238 aaKnown RBP eCLIP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 MBD4O95243 580 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 RASGRP1O95267 797 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 GCNT3O95395 438 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 CLTBP09497 229 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 PSMC2P35998 433 aaKnown RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 MLH1P40692 756 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 GPD2P43304 727 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 DLG4P78352 724 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 PRKAA1Q13131 559 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 DCTN2Q13561 401 aaKnown RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 BTN2A1Q7KYR7 527 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 DACT3Q96B18 629 aaPredicted RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 BCAS3Q9H6U6 928 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 LZTFL1Q9NQ48 299 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 EHD3Q9NZN3 535 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 LRWD1Q9UFC0 647 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 KIAA1257Q9ULG3 409 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 ITIH6Q6UXX5 1313 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 ABCA1O95477 2261 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 C2orf74A8MZ97 194 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 AXIN1O15169 862 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 GUCY1B2O75343 617 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 ASMTLO95671 621 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 CYP2E1P05181 493 aaPredicted RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 MAGEA4P43358 317 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 PROSER3Q2NL68 480 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 ARSJQ5FYB0 599 aaPredicted RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 TMC5Q6UXY8 1006 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 TBC1D1Q86TI0 1168 aaPredicted RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 SLC35F6Q8N357 371 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 NAT16Q8N8M0 369 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 PDCD6IPQ8WUM4 868 aaKnown RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 FAM20AQ96MK3 541 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 NECTIN4Q96NY8 510 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 APBA2Q99767 749 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 PDCD10Q9BUL8 212 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 SLC29A3Q9BZD2 475 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 SPTLC3Q9NUV7 552 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 LRCH1Q9Y2L9 728 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 MTO1Q9Y2Z2 717 aaKnown RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 TRPC5OSA6NMA1 111 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 DNAJB5O75953 348 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 ERP29P30040 261 aaKnown RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 ALDH6A1Q02252 535 aaKnown RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 TFCP2Q12800 502 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 AGBL2Q5U5Z8 902 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 SUSD4Q5VX71 490 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 TUBA3EQ6PEY2 450 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 MACC1Q6ZN28 852 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 CPA6Q8N4T0 437 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 CEP170P1Q96L14 293 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 DBNDD2Q9BQY9 259 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 RERGLQ9H628 205 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 MOV10Q9HCE1 1003 aaKnown RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 OLA1Q9NTK5 396 aaKnown RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 TTC7AQ9ULT0 858 aaPredicted RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 POLR2AP24928 1970 aaKnown RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 EXOC1LA0A1B0GW35 172 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 PVALEFA0A1B0GWK0 134 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 MAGEB16A2A368 324 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 CHP2O43745 196 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 CPP00450 1065 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 OCM2P0CE71 109 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 OCMP0CE72 109 aaPredicted RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 ERVK-10P10266 1014 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 NCF2P19878 526 aaPredicted RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 GRK3P35626 688 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 PRIM2P49643 509 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms