RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 RPS6KL1Q9Y6S9 549 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 SASH3O75995 380 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 USP1O94782 785 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 CYP3A4P08684 503 aa10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 SAMD4BQ5PRF9 694 aaKnown RBP10.64□□□□□ -0.71
CCDC88A-202ENST00000336838 GSNP06396 782 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 NR3C2P08235 984 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 RAD23AP54725 363 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 GEMP55040 296 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 BBS7Q8IWZ6 715 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 CD248Q9HCU0 757 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 OLA1Q9NTK5 396 aaKnown RBP10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 ZNRF3Q9ULT6 936 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 IFNA14P01570 189 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 DMC1Q14565 340 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 TBC1D10BQ4KMP7 808 aaPredicted RBP10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 ZNF484Q5JVG2 852 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 MTDHQ86UE4 582 aaKnown RBP10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 DDX42Q86XP3 938 aaKnown RBP eCLIP10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 STARD8Q92502 1023 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 FAM162AQ96A26 154 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 DCLK3Q9C098 648 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 CYP39A1Q9NYL5 469 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 ADAM28Q9UKQ2 775 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 BCS1LQ9Y276 419 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 IQCA1LA6NCM1 817 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 UNC5CO95185 931 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 FAM200BP0CF97 657 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 MGAT5Q09328 741 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 TP53BP2Q13625 1128 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 PTK2BQ14289 1009 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 VEPH1Q14D04 833 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 ACBD5Q5T8D3 534 aaPredicted RBP10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 SETD9Q8NE22 299 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 STKLD1Q8NE28 680 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 SHCBP1Q8NEM2 672 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 MDM1Q8TC05 714 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 DCUN1D1Q96GG9 259 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 TCF7L2Q9NQB0 619 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 ERBB2P04626 1255 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 ITGAVP06756 1048 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 ADORA2BP29275 332 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 MARSP56192 900 aaKnown RBP10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 C19orf60Q96EN9 201 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 TRHDEQ9UKU6 1024 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 PGAM1P18669 254 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 POLNQ7Z5Q5 900 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 TRIM63Q969Q1 353 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 CPVLQ9H3G5 476 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 HAO1Q9UJM8 370 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 ZNF711Q9Y462 761 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 AKAP3O75969 853 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 NUP188Q5SRE5 1749 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 KAZALD1Q96I82 304 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 C9orf16Q9BUW7 83 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 LRRC19Q9H756 370 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 CHRNB3Q05901 458 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 BMT2Q1RMZ1 405 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 DNERQ8NFT8 737 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 ADGRA2Q96PE1 1338 aa10.63□□□□□ -0.71
CCDC88A-202ENST00000336838 PAX3P23760 479 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 GRIK1P39086 918 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 ZNF268Q14587 947 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 VPS72Q15906 364 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 SMYD5Q6GMV2 418 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 MARCOQ9UEW3 520 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 RSL24D1Q9UHA3 163 aaKnown RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 NAALADL1Q9UQQ1 740 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 EIF3LQ9Y262 564 aaKnown RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 COMMD3-BMI1R4GMX3 469 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 CARNS1A5YM72 827 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 DNAJC6O75061 913 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 EIF4BP23588 611 aaKnown RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 LBRQ14739 615 aaKnown RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 ZC2HC1CQ53FD0 456 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 FAM49AQ9H0Q0 323 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 TIMMDC1Q9NPL8 285 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 C6orf203Q9P0P8 240 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 POLG2Q9UHN1 485 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 TMEM114B3SHH9 223 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 APOC4-APOC2K7ER74 178 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 DNALI1O14645 258 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 GH1P01241 217 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 APOC2P02655 101 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 MCOLN2Q8IZK6 566 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 MTMR8Q96EF0 704 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 RMND5BQ96G75 393 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 MRPL48Q96GC5 212 aaKnown RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 DUSP10Q9Y6W6 482 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 LCA5LO95447 670 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 VIL1P09327 827 aaKnown RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 AQP5P55064 265 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 ZNF483Q8TF39 744 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 VPS33AQ96AX1 596 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 ASIC4Q96FT7 647 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 IRAK4Q9NWZ3 460 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 AGAP1Q9UPQ3 857 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 ASTN2O75129 1339 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 MROH7Q68CQ1 1323 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms