RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 OVOS2A0A0J9YW53 1432 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 OVOS2Q6IE36 1432 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 PNPLA7Q6ZV29 1317 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 ANXA9O76027 345 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 PLEKP08567 350 aaPredicted RBP13.04□□□□□ -0.32
SDC3-201ENST00000336798 AGAP9Q5VTM2 703 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 SGMS1Q86VZ5 419 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 NSL1Q96IY1 281 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 ZNF512BQ96KM6 892 aaPredicted RBP13.04□□□□□ -0.32
SDC3-201ENST00000336798 ZFYVE1Q9HBF4 777 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 CYP39A1Q9NYL5 469 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 GPRC5DQ9NZD1 345 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 CFAP74Q9C0B2 1584 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 TAL1P17542 331 aaPredicted RBP13.04□□□□□ -0.32
SDC3-201ENST00000336798 RCAN1P53805 252 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 UNC45BQ8IWX7 931 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 MYO1HQ8N1T3 1032 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 AGGF1Q8N302 714 aaeCLIP13.04□□□□□ -0.321e-6■■□□□ 11.7
SDC3-201ENST00000336798 TRPC4APQ8TEL6 797 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 ANKRD7Q92527 254 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 SEMA4DQ92854 862 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 ACOX2Q99424 681 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 ERI2A8K979 691 aaKnown RBP13.03□□□□□ -0.32
SDC3-201ENST00000336798 SLC25A27O95847 323 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 PSMA4P25789 261 aaKnown RBP13.03□□□□□ -0.32
SDC3-201ENST00000336798 RHOAP61586 193 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 CUL2Q13617 745 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 DOK6Q6PKX4 331 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 ADGRF2Q8IZF7 708 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 MMGT1Q8N4V1 131 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 EPS8L3Q8TE67 593 aaKnown RBP13.03□□□□□ -0.32
SDC3-201ENST00000336798 KRCC1Q9NPI7 259 aaPredicted RBP13.03□□□□□ -0.32
SDC3-201ENST00000336798 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.03□□□□□ -0.32
SDC3-201ENST00000336798 DYRK3O43781 588 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 NT5C2P49902 561 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 GEMP55040 296 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 CYLC2Q14093 348 aaPredicted RBP13.03□□□□□ -0.32
SDC3-201ENST00000336798 ZNF284Q2VY69 593 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 LINC00523Q86TU6 105 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 CAMKK1Q8N5S9 505 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 DNAJC9Q8WXX5 260 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 A0A1B0GTH6 734 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 TRPC5OSA6NMA1 111 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 NUDT14O95848 222 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 POMCP01189 267 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 CSTF3Q12996 717 aaKnown RBP13.03□□□□□ -0.32
SDC3-201ENST00000336798 NFYCQ13952 458 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 FBXO36Q8NEA4 188 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 IGDCC4Q8TDY8 1250 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 CARD9Q9H257 536 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 ATP6V1HQ9UI12 483 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 SNX13Q9Y5W8 968 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 PLA2G6O60733 806 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 RASA1P20936 1047 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 CLK2P49760 499 aaKnown RBP13.03□□□□□ -0.32
SDC3-201ENST00000336798 C16orf86Q6ZW13 317 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 MPP6Q9NZW5 540 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 CPA4Q9UI42 421 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 CDK12Q9NYV4 1490 aaPredicted RBP13.03□□□□□ -0.32
SDC3-201ENST00000336798 STAG3L1P0CL83 205 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 VCLP18206 1134 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 COPAP53621 1224 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 SOX10P56693 466 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 KLC1Q07866 573 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 SCARA3Q6AZY7 606 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 TYW3Q6IPR3 259 aaKnown RBP13.03□□□□□ -0.32
SDC3-201ENST00000336798 C16orf62Q7Z3J2 963 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 TRMT11Q7Z4G4 463 aaKnown RBP13.03□□□□□ -0.32
SDC3-201ENST00000336798 FBXO10Q9UK96 956 aa13.03□□□□□ -0.32
SDC3-201ENST00000336798 H7C4K7 107 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 RHOCP08134 193 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 KLRC1P26715 233 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 GTF2E2P29084 291 aaKnown RBP13.02□□□□□ -0.32
SDC3-201ENST00000336798 TRAF2Q12933 501 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 CSHL1Q14406 222 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 MRNIPQ6NTE8 343 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 RAD9BQ6WBX8 426 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 DNAAF5Q86Y56 855 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 PGLYRP2Q96PD5 576 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 CLPBQ9H078 707 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 TMCC3Q9ULS5 477 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 RRN3P2A6NIE6 340 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 CCNT2O60583 730 aaKnown RBP13.02□□□□□ -0.32
SDC3-201ENST00000336798 PDE5AO76074 875 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 RHOBTB3O94955 611 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 GRK3P35626 688 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 KRT20P35900 424 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 KPNA1P52294 538 aaPredicted RBP13.02□□□□□ -0.32
SDC3-201ENST00000336798 KLHDC7AQ5VTJ3 777 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 DAB2IPQ5VWQ8 1189 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 ALKBH2Q6NS38 261 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 OR8H2Q8N162 312 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 FAM172AQ8WUF8 416 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 UCMAQ8WVF2 138 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 CELF6Q96J87 481 aaKnown RBP13.02□□□□□ -0.32
SDC3-201ENST00000336798 CCSER1Q9C0I3 900 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 CNTNAP2Q9UHC6 1331 aa13.02□□□□□ -0.32
SDC3-201ENST00000336798 GPR182O15218 404 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 SLC37A4O43826 429 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 URODP06132 367 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms