RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 MCEEQ96PE7 176 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 PRPF18Q99633 342 aaKnown RBP14□□□□□ -0.17
CCDC88C-201ENST00000331194 WWP1Q9H0M0 922 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 PCDH9Q9HC56 1237 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 DNAJB4Q9UDY4 337 aa14□□□□□ -0.17
CCDC88C-201ENST00000331194 IQANK1A0A1B0GTG1 560 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 ITM2AO43736 263 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 CCDC166P0CW27 439 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 WNT7BP56706 349 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 TMEM270Q6UE05 265 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 POLNQ7Z5Q5 900 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 FAM81BQ96LP2 452 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 RGS17Q9UGC6 210 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 TRPA1O75762 1119 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 WEE2P0C1S8 567 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 PAX3P23760 479 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 RPL5P46777 297 aaKnown RBP13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 CD151P48509 253 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 JAG1P78504 1218 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 CBX3Q13185 183 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 MYBPC2Q14324 1141 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 SMAD1Q15797 465 aaKnown RBP13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 VWA5B1Q5TIE3 1220 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 LIN9Q5TKA1 542 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 FAM91A1Q658Y4 838 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 KYAT3Q6YP21 454 aaKnown RBP13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 CERS5Q8N5B7 392 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 FEZF2Q8TBJ5 459 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 SENP7Q9BQF6 1050 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 POMPQ9Y244 141 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 PCDHB2Q9Y5E7 798 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 CD48P09326 243 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 FDFT1P37268 417 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 NOMO3P69849 1222 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 TMEM259Q4ZIN3 620 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 SH2D4BQ5SQS7 431 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 FAM102BQ5T8I3 360 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 LRRC8BQ6P9F7 803 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 KLHL35Q6PF15 583 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 ATG14Q6ZNE5 492 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 DEFB107AQ8IZN7 70 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 SLC44A1Q8WWI5 657 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 CATSPER2Q96P56 530 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 CSRNP1Q96S65 589 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 SENP6Q9GZR1 1112 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 PPP1R1BQ9UD71 204 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 COQ4Q9Y3A0 265 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 HBS1LQ9Y450 684 aaKnown RBP13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 GMEB1Q9Y692 573 aa13.99□□□□□ -0.17
CCDC88C-201ENST00000331194 COL5A3P25940 1745 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 H3BNX3 289 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 IPO5O00410 1097 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 DNAJA2O60884 412 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 NELFEP18615 380 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 CDKN2BP42772 138 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 PLA2G4FQ68DD2 849 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 CDC42EP5Q6NZY7 148 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 C16orf46Q6P387 395 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 KLC3Q6P597 504 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 TSHZ1Q6ZSZ6 1077 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 CRLF3Q8IUI8 442 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 PDIK1LQ8N165 341 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 ZNF778Q96MU6 729 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 SLX1AQ9BQ83 275 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 MRPL1Q9BYD6 325 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 DBNDD1Q9H9R9 158 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 CDH22Q9UJ99 828 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 POLIQ9UNA4 740 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 DRG1Q9Y295 367 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 PLLPQ9Y342 182 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 DTNAQ9Y4J8 743 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 ZHX2Q9Y6X8 837 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 CENPFP49454 3210 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 SDR42E2A6NKP2 422 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 CST8O60676 142 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 TOM1L1O75674 476 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 ITGAVP06756 1048 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 PIM1P11309 404 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 IL1R1P14778 569 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 MYBPC1Q00872 1141 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 SNAPC2Q13487 334 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 PDK1Q15118 436 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 CEP55Q53EZ4 464 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 TEX44Q53QW1 395 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 SLC39A4Q6P5W5 647 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 AAGABQ6PD74 315 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 RSAD2Q8WXG1 361 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 FAM213AQ9BRX8 229 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 RBM38Q9H0Z9 239 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 TMOD2Q9NZR1 351 aa13.98□□□□□ -0.17
CCDC88C-201ENST00000331194 DDTLA6NHG4 134 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 SERPINA6P08185 405 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 GMPRP36959 345 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 ALDH1A3P47895 512 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 RARRES1P49788 294 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 CYLC2Q14093 348 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 TFDP3Q5H9I0 405 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 C6orf52Q5T4I8 152 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 PLEKHA7Q6IQ23 1121 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 ADGRG6Q86SQ4 1221 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms