RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 ZDHHC17Q8IUH5 632 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.52□□□□□ -0.72
HMGB3-201ENST00000325307 FUBP3Q96I24 572 aaKnown RBP eCLIP10.52□□□□□ -0.72
HMGB3-201ENST00000325307 SAR1BQ9Y6B6 198 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 VWA8A3KMH1 1905 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 BMPR1AP36894 532 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 ROR1Q01973 937 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 ADCY1Q08828 1119 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 CFAP221Q4G0U5 840 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 ZFYVE27Q5T4F4 411 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 MEI1Q5TIA1 1274 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 GPRIN1Q7Z2K8 1008 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 NT5DC3Q86UY8 548 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 RNF168Q8IYW5 571 aaPredicted RBP10.52□□□□□ -0.73
HMGB3-201ENST00000325307 TTC9BQ8N6N2 239 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 KCTD13Q8WZ19 329 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 TLR10Q9BXR5 811 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 ULBP1Q9BZM6 244 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 ALG13Q9NP73 1137 aaKnown RBP10.52□□□□□ -0.73
HMGB3-201ENST00000325307 TCRBV5S1A1TA0A578 114 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 MTMR11A4FU01 709 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 LINC01553A4QN01 128 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 PDE2AO00408 941 aaPredicted RBP10.52□□□□□ -0.73
HMGB3-201ENST00000325307 SOAT2O75908 522 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 SASH3O75995 380 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 PROSCO94903 275 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 PDGFRAP16234 1089 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 DESP17661 470 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 DUSP4Q13115 394 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 WHAMMP3Q1A5X7 153 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 SLFN11Q7Z7L1 901 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 CPNE8Q86YQ8 564 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 CEP112Q8N8E3 955 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 SPPL2BQ8TCT7 592 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 SP7Q8TDD2 431 aaPredicted RBP10.52□□□□□ -0.73
HMGB3-201ENST00000325307 CAPZA3Q96KX2 299 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 CSNK1G1Q9HCP0 422 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 BACE2Q9Y5Z0 518 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 PTPRSQ13332 1948 aa10.52□□□□□ -0.73
HMGB3-201ENST00000325307 TBC1D4O60343 1298 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 EFEMP2O95967 443 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 CA3P07451 260 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 USP17L7P0C7H9 530 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 GPR15P49685 360 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 GSCP56915 257 aaPredicted RBP10.51□□□□□ -0.73
HMGB3-201ENST00000325307 SMARCB1Q12824 385 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 TUBB2AQ13885 445 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 ZKSCAN8Q15776 578 aaPredicted RBP10.51□□□□□ -0.73
HMGB3-201ENST00000325307 PPP1R15BQ5SWA1 713 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 RASIP1Q5U651 963 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 DAB2IPQ5VWQ8 1189 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 VSTM1Q6UX27 236 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 CLSTN3Q9BQT9 956 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 C17orf80Q9BSJ5 609 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 TUBB2BQ9BVA1 445 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 ENTPD7Q9NQZ7 604 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 STK39Q9UEW8 545 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 WDR27A2RRH5 827 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 KCNK3O14649 394 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 TRIM66O15016 1216 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 FBXO21O94952 628 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 ZBED1O96006 694 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 MRPS5P82675 430 aaKnown RBP10.51□□□□□ -0.73
HMGB3-201ENST00000325307 CDO1Q16878 200 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 EFHC1Q5JVL4 640 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 SLC8B1Q6J4K2 584 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 CC2D1AQ6P1N0 951 aaPredicted RBP10.51□□□□□ -0.73
HMGB3-201ENST00000325307 UBL4BQ8N7F7 174 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 STKLD1Q8NE28 680 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 GPR152Q8TDT2 470 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 MICAL1Q8TDZ2 1067 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 RXFP2Q8WXD0 754 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 ABCB6Q9NP58 842 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 SNX12Q9UMY4 172 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 RWDD3Q9Y3V2 267 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.51□□□□□ -0.73
HMGB3-201ENST00000325307 CAPN15O75808 1086 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 GPD1P21695 349 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 FLT3P36888 993 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 SLC5A3P53794 718 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 HNRNPH2P55795 449 aaKnown RBP10.51□□□□□ -0.73
HMGB3-201ENST00000325307 ATP11AP98196 1134 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 OGDHQ02218 1023 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 PIGHQ14442 188 aaPredicted RBP10.51□□□□□ -0.73
HMGB3-201ENST00000325307 DNAJC14Q6Y2X3 702 aaPredicted RBP10.51□□□□□ -0.73
HMGB3-201ENST00000325307 SCAMP5Q8TAC9 235 aa10.51□□□□□ -0.73
HMGB3-201ENST00000325307 HHLA1C9JL84 531 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 CAPN9O14815 690 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 RNF8O76064 485 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 CXCL14O95715 111 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 LINC00271P0C7V0 271 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 SDC4P31431 198 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 ELF1P32519 619 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 SLC1A1P43005 524 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 RPL34P49207 117 aaKnown RBP10.5□□□□□ -0.73
HMGB3-201ENST00000325307 SMC1AQ14683 1233 aaKnown RBP10.5□□□□□ -0.73
HMGB3-201ENST00000325307 SLC26A9Q7LBE3 791 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 OSBPL9Q96SU4 736 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 CNGB3Q9NQW8 809 aa10.5□□□□□ -0.73
HMGB3-201ENST00000325307 LCMT1Q9UIC8 334 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms