RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 GPR101Q96P66 508 aaPredicted RBP14.32□□□□□ -0.12
CSPG4-201ENST00000308508 FAM118BQ9BPY3 351 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 BTBD10Q9BSF8 475 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 PHACTR1Q9C0D0 580 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 LMBRD2Q68DH5 695 aaPredicted RBP14.32□□□□□ -0.12
CSPG4-201ENST00000308508 CLVS1Q8IUQ0 354 aaPredicted RBP14.32□□□□□ -0.12
CSPG4-201ENST00000308508 SYTL1Q8IYJ3 562 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 PNKPQ96T60 521 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 OSBPL6Q9BZF3 934 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 RNF146Q9NTX7 359 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 ALDH1A2O94788 518 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 AVPR1AP37288 418 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 NEDD8Q15843 81 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 TIMM50Q3ZCQ8 353 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 CASP12Q6UXS9 341 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 ERO1BQ86YB8 467 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 PPP1R10Q96QC0 940 aaKnown RBP14.32□□□□□ -0.12
CSPG4-201ENST00000308508 DDX20Q9UHI6 824 aaKnown RBP14.32□□□□□ -0.12
CSPG4-201ENST00000308508 AAR2Q9Y312 384 aaKnown RBP14.32□□□□□ -0.12
CSPG4-201ENST00000308508 EPB42P16452 691 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 PRLRP16471 622 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 STAT5AP42229 794 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 BAG6P46379 1132 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 STAT5BP51692 787 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 DCAF6Q58WW2 860 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 DCUN1D5Q9BTE7 237 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 C9orf16Q9BUW7 83 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 YAF2Q8IY57 180 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 ZNF184Q99676 751 aaPredicted RBP14.31□□□□□ -0.12
CSPG4-201ENST00000308508 DUSP12Q9UNI6 340 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 PAX7P23759 505 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 CCDC153Q494R4 210 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 NANOGNBQ7Z5D8 188 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 IZUMO1Q8IYV9 350 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 CRLS1Q9UJA2 301 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 ZDHHC9Q9Y397 364 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 ANKARQ7Z5J8 1434 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 CYP2D6P10635 497 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 GPC1P35052 558 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 TSGA10IPQ3SY00 556 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 ERAP2Q6P179 960 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 MACC1Q6ZN28 852 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 VN1R5Q7Z5H4 357 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 REEP2Q9BRK0 252 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 PDCD10Q9BUL8 212 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 STARD13Q9Y3M8 1113 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 QRICH1Q2TAL8 776 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 C1orf131Q8NDD1 294 aaKnown RBP14.31□□□□□ -0.12
CSPG4-201ENST00000308508 SLC24A2Q9UI40 661 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 DNAJC16Q9Y2G8 782 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 BTN3A3O00478 584 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 TTKP33981 857 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 LGALS3BPQ08380 585 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 OR6Y1Q8NGX8 325 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 UTP15Q8TED0 518 aaKnown RBP14.31□□□□□ -0.12
CSPG4-201ENST00000308508 L3MBTL3Q96JM7 780 aaPredicted RBP14.31□□□□□ -0.12
CSPG4-201ENST00000308508 SLITRK2Q9H156 845 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 MGAT4DA6NG13 374 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 RAD51BO15315 384 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 LCA5LO95447 670 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 ECDO95905 644 aaPredicted RBP14.31□□□□□ -0.12
CSPG4-201ENST00000308508 RARBP10826 455 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 OLFML1Q6UWY5 402 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 ELOA2Q8IYF1 753 aaPredicted RBP14.31□□□□□ -0.12
CSPG4-201ENST00000308508 ZSWIM1Q9BR11 485 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 SNX9Q9Y5X1 595 aa14.31□□□□□ -0.12
CSPG4-201ENST00000308508 VPS26AO75436 327 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 STX11O75558 287 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 RBP1P09455 135 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 WDR60Q8WVS4 1066 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.3□□□□□ -0.12
CSPG4-201ENST00000308508 ASAP1Q9ULH1 1129 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 CLTBP09497 229 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 ACOT2P49753 483 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 HK2P52789 917 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 C2CD6Q53TS8 623 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 PLA2G4FQ68DD2 849 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 IRGCQ6NXR0 463 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 MLPHQ9BV36 600 aaPredicted RBP14.3□□□□□ -0.12
CSPG4-201ENST00000308508 ARMC7Q9H6L4 198 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 POLG2Q9UHN1 485 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 ATP6V1HQ9UI12 483 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 PPP2R1BP30154 601 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 ARMC6Q6NXE6 501 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 MMP19Q99542 508 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 MKNK1Q9BUB5 465 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 DCP1AQ9NPI6 582 aaPredicted RBP14.3□□□□□ -0.12
CSPG4-201ENST00000308508 TUBA8Q9NY65 449 aaPredicted RBP14.3□□□□□ -0.12
CSPG4-201ENST00000308508 ZNF521Q96K83 1311 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 ATMINO43313 823 aaPredicted RBP14.3□□□□□ -0.12
CSPG4-201ENST00000308508 GRAP2O75791 330 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 XRCC4Q13426 336 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 SLC25A24Q6NUK1 477 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 FBXO36Q8NEA4 188 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 ACAD9Q9H845 621 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 RPRD1BQ9NQG5 326 aaKnown RBP14.3□□□□□ -0.12
CSPG4-201ENST00000308508 PRDM5Q9NQX1 630 aaPredicted RBP14.3□□□□□ -0.12
CSPG4-201ENST00000308508 H2AFXP16104 143 aaPredicted RBP14.3□□□□□ -0.12
CSPG4-201ENST00000308508 TTC27Q6P3X3 843 aa14.3□□□□□ -0.12
CSPG4-201ENST00000308508 CAPSLQ8WWF8 208 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms