RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 OR6B3Q8NGW1 331 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 HMGB4Q8WW32 186 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 CLIC6Q96NY7 704 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 FNBP1Q96RU3 617 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 SCNM1Q9BWG6 230 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 FGFBP2Q9BYJ0 223 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 SMPD4Q9NXE4 827 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 TNRC6BQ9UPQ9 1833 aaKnown RBP15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 FASNP49327 2511 aaKnown RBP15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 SPEGQ15772 3267 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 ZBTB24O43167 697 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 ENGP17813 658 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 TNNI1P19237 187 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 SLC6A11P48066 632 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 ATXN3P54252 364 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 SNRPFP62306 86 aaKnown RBP15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 AMPD3Q01432 767 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 DUOXA1Q1HG43 343 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 MAP7D1Q3KQU3 841 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 PEAR1Q5VY43 1037 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 TMEFF1Q8IYR6 380 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 NUP93Q8N1F7 819 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 PGBD3Q8N328 593 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 DEFB124Q8NES8 71 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 RLN3Q8WXF3 142 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 GATA6Q92908 595 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 FBXO32Q969P5 355 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 TNMDQ9H2S6 317 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 NEUROG3Q9Y4Z2 214 aa15.71■□□□□ 0.11
CCDC88B-201ENST00000301897 DMXL2Q8TDJ6 3036 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 TCRBV21S2A2A0A5A6 115 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 TBC1D3BA6NDS4 549 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 H0Y626 953 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 HOXC11O43248 304 aaPredicted RBP15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 TRIM16O95361 564 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 STAU1O95793 577 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 DLATP10515 647 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 CHRM1P11229 460 aaPredicted RBP15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 HNRNPLP14866 589 aaKnown RBP eCLIP15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 ATICP31939 592 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 PTGER3P43115 390 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 TUBP50607 506 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 KDSRQ06136 332 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 HNRNPDQ14103 355 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 PSMD6Q15008 389 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 SNRNP35Q16560 246 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 WDR72Q3MJ13 1102 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 LY6G5CQ5SRR4 150 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 HECTD3Q5T447 861 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 HDDC3Q8N4P3 179 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 B3GALNT2Q8NCR0 500 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 CGRRF1Q99675 332 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 MRPL45Q9BRJ2 306 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 TMEM121BQ9BXQ6 578 aaPredicted RBP15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 CUEDC2Q9H467 287 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 COMMD8Q9NX08 183 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 DEC1Q9P2X7 70 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 MBD1Q9UIS9 605 aaPredicted RBP15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 PILRBQ9UKJ0 227 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 SLC6A14Q9UN76 642 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 SH3BP1Q9Y3L3 701 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 CEP192Q8TEP8 1941 aa15.7■□□□□ 0.1
CCDC88B-201ENST00000301897 A8MXQ7 604 aa15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 ADAM23O75077 832 aa15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 CFIP05156 583 aa15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 MAPK8P45983 427 aa15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 GFPT1Q06210 699 aaPredicted RBP15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 TRPC3Q13507 836 aa15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 SLC39A14Q15043 492 aa15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 SNX30Q5VWJ9 437 aa15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 PIP4P1Q86T03 277 aa15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 C12orf40Q86WS4 652 aa15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 ZNF513Q8N8E2 541 aaPredicted RBP15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 SYAP1Q96A49 352 aaPredicted RBP15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 PANK2Q9BZ23 570 aa15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 CGNQ9P2M7 1197 aaKnown RBP15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 MSRB2Q9Y3D2 182 aa15.69■□□□□ 0.1
CCDC88B-201ENST00000301897 UBE4BO95155 1302 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 COCHO43405 550 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 ZNF217O75362 1048 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 CST3P01034 146 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 SERPINF2P08697 491 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 SPINK2P20155 84 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 RPL6Q02878 288 aaKnown RBP15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 CEBPZQ03701 1054 aaKnown RBP15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 CYP24A1Q07973 514 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 MESP2Q0VG99 397 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 IFRD2Q12894 506 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 SEMA3BQ13214 749 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 CUL4AQ13619 759 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 EMC10Q5UCC4 262 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 ARMCX6Q7L4S7 300 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 SFTPA1Q8IWL2 248 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 ETFBKMTQ8IXQ9 262 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 PHTF2Q8N3S3 785 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 TERB1Q8NA31 727 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 XXYLT1Q8NBI6 393 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 ZNF507Q8TCN5 953 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 ZCCHC14Q8WYQ9 949 aaKnown RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms