RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CSE1LP55060 971 aaKnown RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 LRRC41Q15345 812 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 TSHZ1Q6ZSZ6 1077 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 MARCH10Q8NA82 808 aaPredicted RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 C17orf50Q8WW18 174 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 PTPRN2Q92932 1015 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 CNDP1Q96KN2 507 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 ZNF180Q9UJW8 692 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 GINS2Q9Y248 185 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 TLR3O15455 904 aaKnown RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 PSMG1O95456 288 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 ASMTLO95671 621 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 PCSK2P16519 638 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 MAGEA8P43361 318 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 RPL21P46778 160 aaKnown RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 CDK7P50613 346 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 HIC1Q14526 733 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 R3HDM1Q15032 1099 aaKnown RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 LRRC14Q15048 493 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 KYAT1Q16773 422 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 ZDHHC24Q6UX98 284 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 NLRX1Q86UT6 975 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 FAM13CQ8NE31 585 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 TBCBQ99426 244 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 ZDHHC7Q9NXF8 308 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 FBXO9Q9UK97 447 aaPredicted RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 R3HDM2Q9Y2K5 976 aaKnown RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 PCDHA2Q9Y5H9 948 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 ENO1P06733 434 aaKnown RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 ZCCHC18P0CG32 403 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 IL1R1P14778 569 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 COG2Q14746 738 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 SPDYE7PQ495Y7 208 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 NEK5Q6P3R8 708 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 BORAQ6PGQ7 559 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 ZNF720Q7Z2F6 126 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 RBM12BQ8IXT5 1001 aaKnown RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 AGR3Q8TD06 166 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 FNIP1Q8TF40 1166 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 TGFBRAP1Q8WUH2 860 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 EME1Q96AY2 570 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 PPP1R2P1Q96PQ5 205 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 TSPAN18Q96SJ8 248 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 REEP2Q9BRK0 252 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 TSSK1BQ9BXA7 367 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 DEFB129Q9H1M3 183 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 POLR1BQ9H9Y6 1135 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 LRRC4BQ9NT99 713 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 NINJ2Q9NZG7 142 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 hCG_1642624A0A1W2PR95 340 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 ZNF839A8K0R7 811 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 TRIM24O15164 1050 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 ENTPD3O75355 529 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 TDP2O95551 362 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 CYP4A11Q02928 519 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 CYP4A22Q5TCH4 519 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 CYS1Q717R9 158 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 FKBP9P1Q75LS8 142 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 HACE1Q8IYU2 909 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 SUN5Q8TC36 379 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 GJA10Q969M2 543 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 COPEO14579 308 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 GNB5O14775 395 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 AKAP3O75969 853 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 PGM3O95394 542 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 P4HA1P13674 534 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 PSMC3P17980 439 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 RHBDF2Q6PJF5 856 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 COLGALT2Q8IYK4 626 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 SEPT12Q8IYM1 358 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 OR2W6PQ8NHA6 318 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 JMJD4Q9H9V9 463 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 CYLDQ9NQC7 956 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 NAALADL1Q9UQQ1 740 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 ZMYM2Q9UBW7 1377 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 CFAP99D6REC4 459 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 DDX39AO00148 427 aaKnown RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 ZBTB39O15060 712 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 SNRPAP09012 282 aaKnown RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 ZNF806P0C7X5 589 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 ITGA8P53708 1063 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 NUP107P57740 925 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 NAA20P61599 178 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 KDSRQ06136 332 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 PABPC4Q13310 644 aaKnown RBP eCLIP6.63□□□□□ -1.355e-7■■■□□ 15
VPS35-201ENST00000299138 PTK2BQ14289 1009 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 PRR23CQ6ZRP0 262 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 FAM196AQ6ZSG2 479 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 PDZD4Q76G19 769 aaPredicted RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 NUP93Q8N1F7 819 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 RNF25Q96BH1 459 aaPredicted RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 DGCR14Q96DF8 476 aaKnown RBP6.63□□□□□ -1.35
VPS35-201ENST00000299138 APOPT1Q96IL0 206 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 CITED4Q96RK1 184 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 GORASP1Q9BQQ3 440 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 KPNA7A9QM74 516 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 K7ENM7 598 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 TPBGLP0DKB5 382 aa6.63□□□□□ -1.35
VPS35-201ENST00000299138 TNNI1P19237 187 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms