RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 CASD1Q96PB1 797 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 SMOQ99835 787 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 DNAJB4Q9UDY4 337 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 TBX21Q9UL17 535 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 USP18Q9UMW8 372 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 PTPRDP23468 1912 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 MICAL3Q7RTP6 2002 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 SASH3O75995 380 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 SDC4P31431 198 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 CDKN2BP42772 138 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 EPHB4P54760 987 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 CCL23P55773 120 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 CUL1Q13616 776 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 TAZQ16635 292 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 C15orf59Q2T9L4 293 aaPredicted RBP16.28■□□□□ 0.2
LSM6-201ENST00000296581 EFHC1Q5JVL4 640 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 HDXQ7Z353 690 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 JAMLQ86YT9 394 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 ABI1Q8IZP0 508 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 THEM5Q8N1Q8 247 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 DNAJC5GQ8N7S2 189 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 ZMIZ2Q8NF64 920 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 CMASQ8NFW8 434 aaPredicted RBP16.28■□□□□ 0.2
LSM6-201ENST00000296581 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.28■□□□□ 0.2
LSM6-201ENST00000296581 SLCO2A1Q92959 643 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 MYLPFQ96A32 169 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 CFAP57Q96MR6 1250 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 FAM193BQ96PV7 902 aaPredicted RBP16.28■□□□□ 0.2
LSM6-201ENST00000296581 C11orf84Q9BUA3 381 aaPredicted RBP16.28■□□□□ 0.2
LSM6-201ENST00000296581 HEMGNQ9BXL5 484 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 PPP1R12CQ9BZL4 782 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 ZWILCHQ9H900 591 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 HOMER3Q9NSC5 361 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 NLRC5Q86WI3 1866 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 hCG_1818297A0A087WSY0 165 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 LRRD1A4D1F6 860 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 HOXA2O43364 376 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 AP1G2O75843 785 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 OR1G1P47890 313 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 MAP3K7CLP57077 242 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 ADIGQ0VDE8 80 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 TFDP3Q5H9I0 405 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 SH3PXD2AQ5TCZ1 1133 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 EMBQ6PCB8 327 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 CYP4V2Q6ZWL3 525 aaPredicted RBP16.28■□□□□ 0.2
LSM6-201ENST00000296581 ANKLE1Q8NAG6 615 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 OR10T2Q8NGX3 314 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 SMARCD1Q96GM5 515 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 PEBP4Q96S96 227 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 DCLK3Q9C098 648 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 RAB17Q9H0T7 212 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 CSNK1G1Q9HCP0 422 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 LRFN2Q9ULH4 789 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 EFR3BQ9Y2G0 817 aa16.28■□□□□ 0.2
LSM6-201ENST00000296581 IVLP07476 585 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 CYP2C18P33260 490 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 GJA8P48165 433 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 LMAN1P49257 510 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 TRADDQ15628 312 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 RAB41Q5JT25 222 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 ZFYVE27Q5T4F4 411 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 NPAS4Q8IUM7 802 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 C1orf54Q8WWF1 131 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 PPM1EQ8WY54 764 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 CENPIQ92674 756 aaPredicted RBP16.27■□□□□ 0.2
LSM6-201ENST00000296581 ACSF2Q96CM8 615 aaPredicted RBP16.27■□□□□ 0.2
LSM6-201ENST00000296581 NRDE2Q9H7Z3 1164 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 LRRC4Q9HBW1 653 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 CHST7Q9NS84 486 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 TMEM30AQ9NV96 361 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 PCSK1NQ9UHG2 260 aa16.27■□□□□ 0.2
LSM6-201ENST00000296581 R3HDM2Q9Y2K5 976 aaKnown RBP16.27■□□□□ 0.2
LSM6-201ENST00000296581 UTP11Q9Y3A2 253 aaKnown RBP16.27■□□□□ 0.2
LSM6-201ENST00000296581 FNDC1Q4ZHG4 1894 aaPredicted RBP16.27■□□□□ 0.19
LSM6-201ENST00000296581 HSPA8P11142 646 aaKnown RBP16.26■□□□□ 0.19
LSM6-201ENST00000296581 DESP17661 470 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 KDELR1P24390 212 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 CACNA2D1P54289 1103 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 MRPS5P82675 430 aaKnown RBP16.26■□□□□ 0.19
LSM6-201ENST00000296581 CASP8Q14790 479 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 MAPRE1Q15691 268 aaKnown RBP16.26■□□□□ 0.19
LSM6-201ENST00000296581 CCNG2Q16589 344 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 SMTNL2Q2TAL5 461 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 RAB6CQ53S08 254 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 ODF2Q5BJF6 829 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 DNAJC21Q5F1R6 531 aaKnown RBP16.26■□□□□ 0.19
LSM6-201ENST00000296581 DUPD1Q68J44 220 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 IFT81Q8WYA0 676 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 CAVIN3Q969G5 261 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 ERP44Q9BS26 406 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 TRIM51Q9BSJ1 452 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 DDX23Q9BUQ8 820 aaKnown RBP16.26■□□□□ 0.19
LSM6-201ENST00000296581 RAB6CQ9H0N0 254 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 RASAL2Q9UJF2 1139 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 NFU1Q9UMS0 254 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 HHLA1C9JL84 531 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 TRAPPC3O43617 180 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 HSF2BPO75031 334 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 FBXO21O94952 628 aa16.26■□□□□ 0.19
LSM6-201ENST00000296581 TJP3O95049 919 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms