RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 AENQ8WTP8 325 aaKnown RBP12.13□□□□□ -0.47
SHROOM3-201ENST00000296043 ACAD9Q9H845 621 aa12.13□□□□□ -0.47
SHROOM3-201ENST00000296043 SP140LQ9H930 580 aa12.13□□□□□ -0.47
SHROOM3-201ENST00000296043 PNPLA3Q9NST1 481 aa12.13□□□□□ -0.47
SHROOM3-201ENST00000296043 TUBGCP4Q9UGJ1 667 aa12.13□□□□□ -0.47
SHROOM3-201ENST00000296043 TPRKBQ9Y3C4 175 aa12.13□□□□□ -0.47
SHROOM3-201ENST00000296043 YTHDC2Q9H6S0 1430 aaKnown RBP12.13□□□□□ -0.47
SHROOM3-201ENST00000296043 CCNT2O60583 730 aaKnown RBP12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 TMCC2O75069 709 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 TFRCP02786 760 aaKnown RBP12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 RALAP11233 206 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 NDUFAF6Q330K2 333 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 USP17L2Q6R6M4 530 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 STK32CQ86UX6 486 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 GPD1LQ8N335 351 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 S100PBPQ96BU1 408 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 GSDMCQ9BYG8 508 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 BCL2L14Q9BZR8 327 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 COMMD9Q9P000 198 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 ARID1AO14497 2285 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 ABCB1P08183 1280 aaPredicted RBP12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 CYP2D6P10635 497 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 PRKAR1AP10644 381 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 MLNP12872 115 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 HPCAP84074 193 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 DHDDSQ86SQ9 333 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 TPCN2Q8NHX9 752 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 AMNQ9BXJ7 453 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 KHDRBS3O75525 346 aaKnown RBP12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 TSPAN19P0C672 248 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 USP11P51784 963 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 CYP4F2P78329 520 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 CYP4F3Q08477 520 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 MADCAM1Q13477 382 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 EFHC2Q5JST6 749 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 ARHGAP31Q2M1Z3 1444 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 SP100P23497 879 aaPredicted RBP12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 NCALDP61601 193 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 NFYCQ13952 458 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 PID1Q7Z2X4 250 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 C10orf53Q8N6V4 93 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 MXD3Q9BW11 206 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 CYP4F12Q9HCS2 524 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 RIC8BQ9NVN3 520 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 TMCC3Q9ULS5 477 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 IFT140Q96RY7 1462 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 AXIN1O15169 862 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 CCNA2P20248 432 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 WARSP23381 471 aaKnown RBP12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 POU4F1Q01851 419 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 TXNRD1Q16881 649 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 PROSER1Q86XN7 944 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 SIRT2Q8IXJ6 389 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 SHCBP1Q8NEM2 672 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 GANCQ8TET4 914 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 PHF12Q96QT6 1004 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 NUDT12Q9BQG2 462 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 ACAT2Q9BWD1 397 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 WDR35Q9P2L0 1181 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 CACNA1CQ13936 2221 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 WDR7Q9Y4E6 1490 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 C15orf38-AP3S2A0A0A6YYH1 394 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 ZSCAN5CA6NGD5 496 aaPredicted RBP12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 BTDP43251 543 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 DCAF4L1Q3SXM0 396 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 HMBOX1Q6NT76 420 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 TRIM72Q6ZMU5 477 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 ARPINQ7Z6K5 226 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 DGCR14Q96DF8 476 aaKnown RBP12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 WDR11Q9BZH6 1224 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 BABAM1Q9NWV8 329 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 NUDT5Q9UKK9 219 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 USP17L3A6NCW0 530 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 USP17L4A6NCW7 530 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 UBAP1LF5GYI3 381 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 EPS8Q12929 822 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 IL18R1Q13478 541 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 USP17L1Q7RTZ2 530 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 SNX32Q86XE0 403 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 BPIFB6Q8NFQ5 453 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 TPD52L3Q96J77 140 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 CDC42EP4Q9H3Q1 356 aaKnown RBP12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 ZBTB11O95625 1053 aaPredicted RBP12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 HOXB7P09629 217 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 CHI3L1P36222 383 aaPredicted RBP12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 F8W810 466 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 MYL12BO14950 172 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 ERVK-24P63145 666 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 CCDC157Q569K6 752 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 NET1Q7Z628 596 aaPredicted RBP12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 ZNF671Q8TAW3 534 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 ZSWIM5Q9P217 1185 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 EFR3BQ9Y2G0 817 aa12.12□□□□□ -0.47
SHROOM3-201ENST00000296043 NCF1BA6NI72 391 aaPredicted RBP12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 NCF1CA8MVU1 366 aaPredicted RBP12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 GRAP2O75791 330 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 NCF1P14598 390 aaPredicted RBP12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 ANPEPP15144 967 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 C11orf96Q7Z7L8 435 aa12.11□□□□□ -0.47
SHROOM3-201ENST00000296043 VPS33AQ96AX1 596 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms