RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 XPNPEP3Q9NQH7 507 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 FBXO21O94952 628 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 CMTM5Q96DZ9 223 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 ALDH5A1P51649 535 aaPredicted RBP17.88■□□□□ 0.45
SHANK1-201ENST00000293441 CENPPQ6IPU0 288 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 C3orf67Q6ZVT6 689 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 EFL1Q7Z2Z2 1120 aaKnown RBP17.88■□□□□ 0.45
SHANK1-201ENST00000293441 RIBC1Q8N443 379 aaPredicted RBP17.88■□□□□ 0.45
SHANK1-201ENST00000293441 RIN2Q8WYP3 895 aaPredicted RBP17.88■□□□□ 0.45
SHANK1-201ENST00000293441 OSGEPL1Q9H4B0 414 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.88■□□□□ 0.45
SHANK1-201ENST00000293441 SPTLC1O15269 473 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 VPS26AO75436 327 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 PLCL1Q15111 1095 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 CNPY4Q8N129 248 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 TAS1R2Q8TE23 839 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 ZIM3Q96PE6 472 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 PLA2G4CQ9UP65 541 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 MTO1Q9Y2Z2 717 aaKnown RBP17.88■□□□□ 0.45
SHANK1-201ENST00000293441 A0A087X0T9 212 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 TSPAN3O60637 253 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 SUPT7LO94864 414 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 PCDH8O95206 1070 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 FAM228BP0C875 321 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 GALNTL6Q49A17 601 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 EDEM1Q92611 657 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 MAP2P11137 1827 aaKnown RBP17.88■□□□□ 0.45
SHANK1-201ENST00000293441 WNT10BO00744 389 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 CAND2O75155 1236 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 SHMT1P34896 483 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 BST2Q10589 180 aaKnown RBP17.88■□□□□ 0.45
SHANK1-201ENST00000293441 COPS7BQ9H9Q2 264 aaPredicted RBP17.88■□□□□ 0.45
SHANK1-201ENST00000293441 PDGFCQ9NRA1 345 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 ITGA11Q9UKX5 1188 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 TRIM17Q9Y577 477 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 TRIM16O95361 564 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 UBE3AQ05086 875 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 OVOS1Q6IE37 1185 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 EMC1Q8N766 993 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 ATP8B4Q8TF62 1192 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 ELMO3Q96BJ8 720 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 PDLIM2Q96JY6 352 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 XPO6Q96QU8 1125 aaKnown RBP17.87■□□□□ 0.45
SHANK1-201ENST00000293441 ASCC2Q9H1I8 757 aaPredicted RBP17.87■□□□□ 0.45
SHANK1-201ENST00000293441 KANSL3Q9P2N6 904 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 TOB1P50616 345 aaPredicted RBP17.87■□□□□ 0.45
SHANK1-201ENST00000293441 OTUD4Q01804 1114 aaKnown RBP17.87■□□□□ 0.45
SHANK1-201ENST00000293441 EME1Q96AY2 570 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 ERP27Q96DN0 273 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 TSEN34Q9BSV6 310 aaKnown RBP17.87■□□□□ 0.45
SHANK1-201ENST00000293441 IGFLR1Q9H665 355 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 GUCA1CO95843 209 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 ACAT1P24752 427 aaKnown RBP17.87■□□□□ 0.45
SHANK1-201ENST00000293441 PTPAQ15257 358 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 FAM171A1Q5VUB5 890 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 C10orf53Q8N6V4 93 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 TRAPPC12Q8WVT3 735 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 KCNK16Q96T55 309 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 KIAA1683Q9H0B3 1180 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 FAM205AQ6ZU69 1335 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 SKAP2O75563 359 aaPredicted RBP17.87■□□□□ 0.45
SHANK1-201ENST00000293441 GALNT4Q8N4A0 578 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 PACSIN1Q9BY11 444 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 CLPBQ9H078 707 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.87■□□□□ 0.45
SHANK1-201ENST00000293441 VIL1P09327 827 aaKnown RBP17.87■□□□□ 0.45
SHANK1-201ENST00000293441 BTG3Q14201 252 aaPredicted RBP17.87■□□□□ 0.45
SHANK1-201ENST00000293441 ELOA2Q8IYF1 753 aaPredicted RBP17.87■□□□□ 0.45
SHANK1-201ENST00000293441 RXFP2Q8WXD0 754 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 YIPF3Q9GZM5 350 aa17.87■□□□□ 0.45
SHANK1-201ENST00000293441 EIF3LQ9Y262 564 aaKnown RBP17.87■□□□□ 0.45
SHANK1-201ENST00000293441 LOC100653049A0A140TA62 436 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 KRT34O76011 436 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 MYO1HQ8N1T3 1032 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 FBXO36Q8NEA4 188 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 TNIP2Q8NFZ5 429 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 MAGEB10Q96LZ2 347 aaPredicted RBP17.86■□□□□ 0.45
SHANK1-201ENST00000293441 CCT8L2Q96SF2 557 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 P2RX7Q99572 595 aaKnown RBP17.86■□□□□ 0.45
SHANK1-201ENST00000293441 NCOA3Q9Y6Q9 1424 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 LRRIQ3A6PVS8 624 aaPredicted RBP17.86■□□□□ 0.45
SHANK1-201ENST00000293441 PCNAP12004 261 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 GLRBP48167 497 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 CDCA5Q96FF9 252 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 ECSITQ9BQ95 431 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 RIOX1Q9H6W3 641 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 MAN1C1Q9NR34 630 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 CXCL11O14625 94 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 FAM107AO95990 144 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 CHI3L1P36222 383 aaPredicted RBP17.86■□□□□ 0.45
SHANK1-201ENST00000293441 PTPN11Q06124 597 aaPredicted RBP17.86■□□□□ 0.45
SHANK1-201ENST00000293441 FAM111AQ96PZ2 611 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 UBP1Q9NZI7 540 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 F8W810 466 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 IMPDH2P12268 514 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 KPNA1P52294 538 aaPredicted RBP17.86■□□□□ 0.45
SHANK1-201ENST00000293441 PSMC6P62333 389 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 SYT15Q9BQS2 421 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 PCDHB5Q9Y5E4 795 aa17.86■□□□□ 0.45
SHANK1-201ENST00000293441 SPACA6W5XKT8 324 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms