RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 MTDHQ86UE4 582 aaKnown RBP17.35■□□□□ 0.37
VPS54-201ENST00000272322 MKI67P46013 3256 aaKnown RBP17.35■□□□□ 0.37
VPS54-201ENST00000272322 CFAP69A5D8W1 941 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 UPP2O95045 317 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 INHBAP08476 426 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 GPD1P21695 349 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 ACAT1P24752 427 aaKnown RBP17.35■□□□□ 0.37
VPS54-201ENST00000272322 ABCD1P33897 745 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 AP3M2P53677 418 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 ZBTB16Q05516 673 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 PTK7Q13308 1070 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 SETDB1Q15047 1291 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 CCDC62Q6P9F0 684 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 BBS12Q6ZW61 710 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 CATSPER4Q7RTX7 472 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 ANKRD13AQ8IZ07 590 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 ATP11CQ8NB49 1132 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 CHKBQ9Y259 395 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 TNFSF13BQ9Y275 285 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 A8MXQ7 604 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 CYB561D2O14569 222 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 ZBED1O96006 694 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 LMO2P25791 158 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 MAP2K2P36507 400 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 GBE1Q04446 702 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 OTOAQ7RTW8 1153 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 FAM131BQ86XD5 332 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 RFWD2Q8NHY2 731 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 ZNF75CPQ92670 426 aaPredicted RBP17.35■□□□□ 0.37
VPS54-201ENST00000272322 NKD2Q969F2 451 aaPredicted RBP17.35■□□□□ 0.37
VPS54-201ENST00000272322 ATXN7L3BQ96GX2 97 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 PRR11Q96HE9 360 aaPredicted RBP17.35■□□□□ 0.37
VPS54-201ENST00000272322 MPHOSPH6Q99547 160 aaKnown RBP17.35■□□□□ 0.37
VPS54-201ENST00000272322 FBXO6Q9NRD1 293 aaPredicted RBP17.35■□□□□ 0.37
VPS54-201ENST00000272322 ASNSD1Q9NWL6 643 aa17.35■□□□□ 0.37
VPS54-201ENST00000272322 LOXHD1Q8IVV2 1947 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 TCRBV9S1A1TA0A576 114 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 CXorf49A8MYA2 514 aaPredicted RBP17.34■□□□□ 0.37
VPS54-201ENST00000272322 MROH9Q5TGP6 573 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 CES3Q6UWW8 571 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 ADAM32Q8TC27 787 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 SERAC1Q96JX3 654 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 NT5C1AQ9BXI3 368 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 ZNF518BQ9C0D4 1074 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 ATXN2Q99700 1313 aaKnown RBP17.34■□□□□ 0.37
VPS54-201ENST00000272322 OLIG2Q13516 323 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 PPP2R5DQ14738 602 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 SURF1Q15526 300 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 TTC30AQ86WT1 665 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 NAT8LQ8N9F0 302 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 NXF3Q9H4D5 531 aaKnown RBP17.34■□□□□ 0.37
VPS54-201ENST00000272322 PRMT7Q9NVM4 692 aaPredicted RBP17.34■□□□□ 0.37
VPS54-201ENST00000272322 ARMCX1Q9P291 453 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 PCDHGC3Q9UN70 934 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 A0A0G2JLL6 359 aaPredicted RBP17.34■□□□□ 0.37
VPS54-201ENST00000272322 DYNC1LI2O43237 492 aaPredicted RBP17.34■□□□□ 0.37
VPS54-201ENST00000272322 LPXNO60711 386 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 BGNP21810 368 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 GTF2A2P52657 109 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 ZNF200P98182 395 aaPredicted RBP17.34■□□□□ 0.37
VPS54-201ENST00000272322 TAF1BQ53T94 588 aaPredicted RBP17.34■□□□□ 0.37
VPS54-201ENST00000272322 PLEKHG4Q58EX7 1191 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 PRRT2Q7Z6L0 340 aaPredicted RBP17.34■□□□□ 0.37
VPS54-201ENST00000272322 GIMAP7Q8NHV1 300 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 LGALS13Q9UHV8 139 aa17.34■□□□□ 0.37
VPS54-201ENST00000272322 IGKV6-21A0A0C4DH24 114 aa17.33■□□□□ 0.37
VPS54-201ENST00000272322 DIAPH2O60879 1101 aa17.33■□□□□ 0.37
VPS54-201ENST00000272322 DNAJC8O75937 253 aaPredicted RBP17.33■□□□□ 0.37
VPS54-201ENST00000272322 SDC4P31431 198 aa17.33■□□□□ 0.37
VPS54-201ENST00000272322 LRRC38Q5VT99 294 aa17.33■□□□□ 0.37
VPS54-201ENST00000272322 CCDC134Q9H6E4 229 aa17.33■□□□□ 0.37
VPS54-201ENST00000272322 SHOC2Q9UQ13 582 aa17.33■□□□□ 0.37
VPS54-201ENST00000272322 DRG1Q9Y295 367 aaKnown RBP17.33■□□□□ 0.37
VPS54-201ENST00000272322 NUMBLQ9Y6R0 609 aa17.33■□□□□ 0.37
VPS54-201ENST00000272322 RLFQ13129 1914 aa17.33■□□□□ 0.36
VPS54-201ENST00000272322 EZRP15311 586 aaKnown RBP17.33■□□□□ 0.36
VPS54-201ENST00000272322 PROZP22891 400 aa17.33■□□□□ 0.36
VPS54-201ENST00000272322 PHBP35232 272 aa17.33■□□□□ 0.36
VPS54-201ENST00000272322 ZCCHC23Q6ZST2 131 aa17.33■□□□□ 0.36
VPS54-201ENST00000272322 PLPPR4Q7Z2D5 763 aa17.33■□□□□ 0.36
VPS54-201ENST00000272322 MPP5Q8N3R9 675 aa17.33■□□□□ 0.36
VPS54-201ENST00000272322 CCHCR1Q8TD31 782 aa17.33■□□□□ 0.36
VPS54-201ENST00000272322 SLC10A4Q96EP9 437 aa17.33■□□□□ 0.36
VPS54-201ENST00000272322 TTC25Q96NG3 672 aa17.33■□□□□ 0.36
VPS54-201ENST00000272322 IQCGQ9H095 443 aaKnown RBP17.33■□□□□ 0.36
VPS54-201ENST00000272322 EPHB2P29323 1055 aa17.33■□□□□ 0.36
VPS54-201ENST00000272322 GJA5P36382 358 aa17.33■□□□□ 0.36
VPS54-201ENST00000272322 ARHGAP1Q07960 439 aa17.33■□□□□ 0.36
VPS54-201ENST00000272322 CCDC14Q49A88 953 aa17.33■□□□□ 0.36
VPS54-201ENST00000272322 NOL9Q5SY16 702 aaKnown RBP17.33■□□□□ 0.36
VPS54-201ENST00000272322 TRMT10BQ6PF06 316 aaKnown RBP17.33■□□□□ 0.36
VPS54-201ENST00000272322 SNRNP25Q9BV90 132 aaKnown RBP17.33■□□□□ 0.36
VPS54-201ENST00000272322 RXFP1Q9HBX9 757 aa17.33■□□□□ 0.36
VPS54-201ENST00000272322 ADARB2Q9NS39 739 aaKnown RBP17.33■□□□□ 0.36
VPS54-201ENST00000272322 TIMM13Q9Y5L4 95 aaPredicted RBP17.33■□□□□ 0.36
VPS54-201ENST00000272322 TRIM49D1C9J1S8 452 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 APOC4-APOC2K7ER74 178 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 CLDN5O00501 218 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 APOC2P02655 101 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 ABCG1P45844 678 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms